The 2.0 version of rSNPBase

Variant report

Variant rs805396
Chromosome Location chr2:54109451-54109452
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54087000-54168000 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr2:54087200-54176000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
3 chr2:54087400-54112200 Weak transcription Psoas Muscle Psoas
4 chr2:54087400-54112600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr2:54087400-54117400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr2:54087400-54137600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr2:54087600-54110800 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr2:54087600-54113600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr2:54087600-54116600 Weak transcription Pancreas Pancrea
10 chr2:54087600-54117000 Weak transcription Placenta Amnion Placenta Amnion
11 chr2:54087600-54187600 Weak transcription Stomach Mucosa stomach
12 chr2:54087800-54112200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr2:54088000-54113800 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr2:54088400-54137200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr2:54088600-54138000 Strong transcription Primary B cells from peripheral blood blood
16 chr2:54089800-54136000 Strong transcription Primary hematopoietic stem cells short term culture blood
17 chr2:54090200-54137800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr2:54090200-54138200 Strong transcription HUES64 Cell Line embryonic stem cell
19 chr2:54090400-54137600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr2:54090800-54137400 Strong transcription Primary T cells fromperipheralblood blood
21 chr2:54091000-54137000 Strong transcription Fetal Thymus thymus
22 chr2:54091000-54137800 Strong transcription iPS-20b Cell Line embryonic stem cell
23 chr2:54091000-54138000 Strong transcription HUES48 Cell Line embryonic stem cell
24 chr2:54091200-54138000 Strong transcription Primary T helper cells fromperipheralblood blood
25 chr2:54091400-54137600 Strong transcription Liver Liver
26 chr2:54093800-54124000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr2:54094000-54110600 Weak transcription Colon Smooth Muscle Colon
28 chr2:54094000-54137800 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr2:54094600-54110400 Weak transcription Esophagus oesophagus
30 chr2:54094800-54113200 Weak transcription Spleen Spleen
31 chr2:54095400-54111800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
32 chr2:54099200-54137400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr2:54100400-54137800 Strong transcription HUES6 Cell Line embryonic stem cell
34 chr2:54100400-54137800 Strong transcription Rectal Mucosa Donor 29 rectum
35 chr2:54100400-54140200 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr2:54100600-54123000 Strong transcription Primary hematopoietic stem cells blood
37 chr2:54100600-54137400 Strong transcription Placenta Placenta
38 chr2:54100600-54137800 Strong transcription Primary B cells from cord blood blood
39 chr2:54100600-54141200 Strong transcription Primary monocytes fromperipheralblood blood
40 chr2:54100800-54138000 Strong transcription Fetal Muscle Trunk muscle
41 chr2:54101400-54110800 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr2:54101800-54110600 Weak transcription Fetal Heart heart
43 chr2:54102000-54110400 Weak transcription Right Ventricle heart
44 chr2:54102000-54110800 Weak transcription Fetal Kidney kidney
45 chr2:54102000-54111000 Weak transcription Brain Angular Gyrus brain
46 chr2:54102000-54111600 Weak transcription Brain Cingulate Gyrus brain
47 chr2:54102000-54113400 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr2:54102000-54124400 Weak transcription Small Intestine intestine
49 chr2:54102200-54112600 Weak transcription Ovary ovary
50 chr2:54102200-54113400 Weak transcription Gastric stomach

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Last update: Aug 31, 2015