Variant report

Variant	rs2909460
Chromosome Location	chr2:54194748-54194749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr2:54194414-54194751	GM12878	blood:	n/a	n/a
2	GATA3	chr2:54194718-54195048	T-47D	breast:	n/a	n/a
3	GATA3	chr2:54194707-54195077	T-47D	breast:	n/a	n/a
4	PAX5	chr2:54194449-54194748	GM12878	blood:	n/a	n/a
5	ZNF384	chr2:54194563-54195040	K562	blood:	n/a	n/a
6	ZNF384	chr2:54194566-54195061	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:54165576..54167252-chr2:54193257..54196468,3	K562	blood:
2	chr2:54186673..54188652-chr2:54193510..54195241,2	MCF-7	breast:
3	chr2:54185625..54188123-chr2:54194333..54197670,3	MCF-7	breast:
4	chr2:54184275..54188127-chr2:54193177..54197889,6	K562	blood:
5	chr2:54176939..54180611-chr2:54194148..54196574,3	K562	blood:

No data

Variant related genes	Relation type
ACYP2	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10084355	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10201364	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10203576	0.83[AMR][1000 genomes]
rs11125519	0.84[AMR][1000 genomes]
rs11687324	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12616212	0.85[EUR][1000 genomes]
rs12713253	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1363062	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1363063	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1421617	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1421622	0.83[AMR][1000 genomes]
rs17268179	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2111868	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2884254	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6545376	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6545378	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6724389	0.88[EUR][1000 genomes]
rs6749817	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs698858	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs718872	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7569214	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7569370	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7571086	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7609017	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs805308	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805309	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805322	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs805335	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs805341	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805342	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805343	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805345	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805358	0.82[AMR][1000 genomes]
rs805359	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs805361	0.82[AMR][1000 genomes]
rs805366	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs805367	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805375	0.81[AMR][1000 genomes]
rs805379	0.80[AMR][1000 genomes]
rs805380	0.81[AMR][1000 genomes]
rs805391	0.81[AMR][1000 genomes]
rs805392	0.80[AMR][1000 genomes]
rs805402	0.83[AMR][1000 genomes]
rs805410	0.80[AMR][1000 genomes]
rs805421	0.84[AMR][1000 genomes]
rs805423	0.86[AMR][1000 genomes]
rs805424	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs805444	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs805450	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs805453	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs809280	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2909460	ACYP2	cis	Muscle Skeletal	GTEx

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54159400-54195800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:54174200-54195600	Weak transcription	Thymus	Thymus
3	chr2:54175200-54195400	Weak transcription	Fetal Stomach	stomach
4	chr2:54176200-54195400	Weak transcription	Fetal Intestine Large	intestine
5	chr2:54176200-54195400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr2:54176200-54196000	Weak transcription	Fetal Thymus	thymus
7	chr2:54176200-54196200	Weak transcription	Placenta	Placenta
8	chr2:54176400-54194800	Weak transcription	NHLF	lung
9	chr2:54176400-54195000	Weak transcription	HSMM	muscle
10	chr2:54177000-54194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:54177800-54195400	Weak transcription	Right Ventricle	heart
12	chr2:54180000-54195400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:54188400-54195400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:54188600-54195200	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:54188800-54195800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr2:54189000-54195400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:54189400-54195400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr2:54189600-54195600	Weak transcription	Fetal Kidney	kidney
19	chr2:54189800-54196400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:54190000-54196400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr2:54190200-54195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:54190400-54194800	Weak transcription	Ovary	ovary
23	chr2:54190400-54195600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr2:54190400-54195600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:54190400-54197000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:54190600-54195400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr2:54190600-54195400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr2:54190600-54195800	Weak transcription	Colonic Mucosa	Colon
29	chr2:54190600-54196400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:54190600-54197000	Weak transcription	Esophagus	oesophagus
31	chr2:54190800-54194800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:54190800-54194800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr2:54190800-54195400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:54191800-54195200	Enhancers	Psoas Muscle	Psoas
35	chr2:54191800-54195800	Enhancers	Primary B cells from peripheral blood	blood
36	chr2:54192000-54194800	Weak transcription	Osteobl	bone
37	chr2:54192000-54195400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr2:54192200-54195400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr2:54192400-54194800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr2:54192400-54194800	Weak transcription	Adipose Nuclei	Adipose
41	chr2:54192400-54194800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:54192400-54195400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr2:54192400-54195400	Enhancers	Lung	lung
44	chr2:54192400-54195400	Weak transcription	A549	lung
45	chr2:54192400-54195600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr2:54192400-54195600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:54192400-54196000	Enhancers	Primary T cells fromperipheralblood	blood
48	chr2:54192600-54194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr2:54192600-54194800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:54192600-54194800	Weak transcription	NHEK	skin

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