Variant report
| Variant | rs8056411 |
|---|---|
| Chromosome Location | chr16:48107562-48107563 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:48107011..48108589-chr16:48109218..48111502,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11864016 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11864570 | 0.85[AMR][1000 genomes] |
| rs13330882 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13333718 | 0.86[AMR][1000 genomes] |
| rs13334475 | 0.86[AMR][1000 genomes] |
| rs16945786 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs28431782 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs56093600 | 0.85[AMR][1000 genomes] |
| rs59466391 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6500304 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6500305 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7187069 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73540833 | 1.00[AMR][1000 genomes] |
| rs73540853 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8046592 | 1.00[AMR][1000 genomes] |
| rs8048367 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8056553 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8058288 | 0.86[AMR][1000 genomes] |
| rs9925287 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs9933277 | 1.00[AMR][1000 genomes] |
| rs9936532 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520355 | chr16:47424828-48164777 | Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:48104800-48109000 | Weak transcription | Osteobl | bone |
