Variant report

Variant	rs8058288
Chromosome Location	chr16:48082735-48082736
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11861448	1.00[EUR][1000 genomes]
rs11864016	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864570	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12103132	1.00[EUR][1000 genomes]
rs13330281	1.00[EUR][1000 genomes]
rs13330882	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331266	1.00[EUR][1000 genomes]
rs13333718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334423	1.00[EUR][1000 genomes]
rs13334475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13335010	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1345425	1.00[EUR][1000 genomes]
rs16945786	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16945813	1.00[EUR][1000 genomes]
rs16945816	1.00[EUR][1000 genomes]
rs16945819	1.00[EUR][1000 genomes]
rs16945824	1.00[EUR][1000 genomes]
rs16945828	1.00[EUR][1000 genomes]
rs16945831	1.00[EUR][1000 genomes]
rs16945835	1.00[EUR][1000 genomes]
rs16945839	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16945860	1.00[EUR][1000 genomes]
rs2016940	1.00[EUR][1000 genomes]
rs28431782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526661	1.00[EUR][1000 genomes]
rs28531369	1.00[EUR][1000 genomes]
rs28587611	1.00[EUR][1000 genomes]
rs28592871	1.00[EUR][1000 genomes]
rs28669266	1.00[EUR][1000 genomes]
rs34106426	1.00[EUR][1000 genomes]
rs4785405	1.00[EUR][1000 genomes]
rs56093600	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57124014	1.00[EUR][1000 genomes]
rs57432729	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57740199	1.00[EUR][1000 genomes]
rs58204235	1.00[EUR][1000 genomes]
rs58622309	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59311846	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59312258	1.00[EUR][1000 genomes]
rs59466391	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59528776	1.00[EUR][1000 genomes]
rs59766379	1.00[EUR][1000 genomes]
rs59832329	1.00[EUR][1000 genomes]
rs59966196	1.00[EUR][1000 genomes]
rs6500304	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6500305	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187069	1.00[EUR][1000 genomes]
rs7197701	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203314	1.00[EUR][1000 genomes]
rs73540833	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73540845	1.00[EUR][1000 genomes]
rs73540853	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018249	1.00[EUR][1000 genomes]
rs74018255	1.00[EUR][1000 genomes]
rs8046592	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8048367	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8056411	0.86[AMR][1000 genomes]
rs8056553	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9302750	1.00[EUR][1000 genomes]
rs939360	1.00[EUR][1000 genomes]
rs939362	1.00[EUR][1000 genomes]
rs961668	1.00[EUR][1000 genomes]
rs9925287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9926338	1.00[EUR][1000 genomes]
rs9933094	1.00[EUR][1000 genomes]
rs9933277	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9935027	1.00[EUR][1000 genomes]
rs9936500	1.00[EUR][1000 genomes]
rs9936532	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9938810	1.00[EUR][1000 genomes]
rs9940987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv15426	chr16:48078692-48084956	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48076200-48088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:48077400-48086000	Weak transcription	Fetal Brain Female	brain
3	chr16:48079200-48087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr16:48079400-48087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr16:48079800-48086800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr16:48080800-48083200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr16:48081400-48083000	Enhancers	Spleen	Spleen
8	chr16:48081400-48088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:48081600-48084000	Weak transcription	Lung	lung
10	chr16:48081600-48085800	Weak transcription	Fetal Brain Male	brain
11	chr16:48081600-48088800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:48081800-48083000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr16:48082000-48083600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr16:48082000-48086800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr16:48082000-48087000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr16:48082200-48086000	Weak transcription	Brain Germinal Matrix	brain
17	chr16:48082400-48087600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links