Variant report

Variant	rs806161
Chromosome Location	chr7:127319791-127319792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1019578	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10228031	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10229187	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1025075	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1440973	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17133046	0.81[AFR][1000 genomes]
rs1966517	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2582716	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs325438	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs325439	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs325443	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs325448	0.84[AFR][1000 genomes]
rs325449	0.84[AFR][1000 genomes]
rs327509	1.00[AMR][1000 genomes]
rs327514	1.00[AMR][1000 genomes]
rs327515	1.00[AMR][1000 genomes]
rs327517	1.00[AMR][1000 genomes]
rs327519	0.89[AMR][1000 genomes]
rs327522	0.89[AMR][1000 genomes]
rs452896	0.89[AMR][1000 genomes]
rs4728078	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4731379	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4731382	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4731383	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4731384	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs537972	1.00[AMR][1000 genomes]
rs6467142	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6467146	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6467147	0.83[AMR][1000 genomes]
rs6467149	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6467150	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6467151	0.83[AMR][1000 genomes]
rs6950211	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6979918	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs698407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs698409	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs712706	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs712708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs712709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs712710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs712711	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs712713	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs712714	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs712717	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs712720	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73720863	0.89[AMR][1000 genomes]
rs806126	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs806163	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs806164	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs806165	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs806167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs806168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs806170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs806171	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs806173	0.83[AMR][1000 genomes]
rs809333	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1031658	chr7:127266882-127376775	Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv831123	chr7:127289511-127510396	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127293200-127322000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:127293200-127326600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:127294800-127327400	Weak transcription	Fetal Kidney	kidney
4	chr7:127295000-127322200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:127295200-127321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:127295400-127326400	Weak transcription	Thymus	Thymus
7	chr7:127296200-127326600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:127299000-127334400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:127300600-127320400	Weak transcription	Placenta	Placenta
10	chr7:127300800-127319800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:127304600-127326600	Weak transcription	Fetal Stomach	stomach
12	chr7:127305200-127326600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:127306600-127323600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:127307000-127322000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:127307000-127324200	Weak transcription	Fetal Heart	heart
16	chr7:127307000-127324200	Weak transcription	Stomach Mucosa	stomach
17	chr7:127307000-127330200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:127307200-127323200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:127307800-127324400	Weak transcription	Small Intestine	intestine
20	chr7:127308000-127323600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:127308200-127326600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr7:127308400-127326600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:127308800-127323600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:127308800-127323600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:127308800-127333600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:127309400-127333600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:127309600-127339600	Weak transcription	Brain Germinal Matrix	brain
28	chr7:127310600-127326400	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:127311200-127326600	Weak transcription	Hela-S3	cervix
30	chr7:127312000-127323200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:127314000-127319800	Strong transcription	K562	blood
32	chr7:127314200-127323600	Weak transcription	Gastric	stomach
33	chr7:127314400-127323200	Weak transcription	Left Ventricle	heart
34	chr7:127314400-127323400	Weak transcription	Pancreas	Pancrea
35	chr7:127314400-127326000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:127314400-127326600	Weak transcription	Spleen	Spleen
37	chr7:127314400-127327600	Weak transcription	Brain Anterior Caudate	brain
38	chr7:127314400-127330400	Weak transcription	Esophagus	oesophagus
39	chr7:127315600-127320000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr7:127315800-127319800	Strong transcription	Liver	Liver
41	chr7:127316000-127321400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:127316400-127323800	Weak transcription	Ovary	ovary
43	chr7:127316400-127326600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:127317000-127326600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:127317400-127319800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:127317400-127321400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr7:127317600-127319800	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr7:127317600-127320000	Enhancers	Muscle Satellite Cultured Cells	--
49	chr7:127317600-127320000	Enhancers	Colon Smooth Muscle	Colon
50	chr7:127317600-127320000	ZNF genes & repeats	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links