Variant report

Variant	rs537972
Chromosome Location	chr7:127254460-127254461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127232542..127235287-chr7:127252972..127255661,2	K562	blood:

Variant related genes	Relation type
ENSG00000179562	Chromatin interaction
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1019578	0.88[AMR][1000 genomes]
rs10228031	0.88[AMR][1000 genomes]
rs10229187	0.88[AMR][1000 genomes]
rs1025075	0.83[AMR][1000 genomes]
rs1440973	0.88[AMR][1000 genomes]
rs182750	1.00[ASN][1000 genomes]
rs1966517	0.88[AMR][1000 genomes]
rs2582716	1.00[AMR][1000 genomes]
rs325438	0.88[AMR][1000 genomes]
rs325439	0.88[AMR][1000 genomes]
rs325443	0.83[AMR][1000 genomes]
rs327509	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs327514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs327515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs327517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs327519	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs327522	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs452896	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4728078	0.88[AMR][1000 genomes]
rs4731379	0.88[AMR][1000 genomes]
rs4731382	0.88[AMR][1000 genomes]
rs4731383	0.88[AMR][1000 genomes]
rs4731384	0.88[AMR][1000 genomes]
rs6467142	0.83[AMR][1000 genomes]
rs6467146	0.88[AMR][1000 genomes]
rs6467147	0.83[AMR][1000 genomes]
rs6467149	0.88[AMR][1000 genomes]
rs6467150	0.88[AMR][1000 genomes]
rs6467151	0.83[AMR][1000 genomes]
rs6950211	0.88[AMR][1000 genomes]
rs6979918	0.88[AMR][1000 genomes]
rs698407	1.00[AMR][1000 genomes]
rs698409	0.88[AMR][1000 genomes]
rs712706	0.83[AMR][1000 genomes]
rs712708	1.00[AMR][1000 genomes]
rs712709	1.00[AMR][1000 genomes]
rs712710	1.00[AMR][1000 genomes]
rs712711	0.88[AMR][1000 genomes]
rs712713	0.88[AMR][1000 genomes]
rs712714	0.88[AMR][1000 genomes]
rs712717	1.00[AMR][1000 genomes]
rs712720	0.88[AMR][1000 genomes]
rs73720863	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs806126	1.00[AMR][1000 genomes]
rs806161	1.00[AMR][1000 genomes]
rs806163	0.88[AMR][1000 genomes]
rs806164	0.88[AMR][1000 genomes]
rs806165	0.88[AMR][1000 genomes]
rs806167	1.00[AMR][1000 genomes]
rs806168	1.00[AMR][1000 genomes]
rs806170	1.00[AMR][1000 genomes]
rs806171	1.00[AMR][1000 genomes]
rs806173	0.83[AMR][1000 genomes]
rs806182	0.88[ASN][1000 genomes]
rs809333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127249800-127259600	Weak transcription	Pancreas	Pancrea

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