Variant report
Variant | rs806182 |
---|---|
Chromosome Location | chr7:127279044-127279045 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000240790 | Chromatin interaction |
ENSG00000197157 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1019578 | 0.81[AMR][1000 genomes] |
rs10228031 | 0.81[AMR][1000 genomes] |
rs10229187 | 0.81[AMR][1000 genomes] |
rs1372042 | 1.00[AFR][1000 genomes] |
rs1440973 | 0.81[AMR][1000 genomes] |
rs17133046 | 0.81[AMR][1000 genomes] |
rs182750 | 0.88[ASN][1000 genomes] |
rs1833146 | 0.81[AMR][1000 genomes] |
rs1966517 | 0.81[AMR][1000 genomes] |
rs2582716 | 0.89[ASN][1000 genomes] |
rs325438 | 0.81[AMR][1000 genomes] |
rs325439 | 0.81[AMR][1000 genomes] |
rs325443 | 0.86[AMR][1000 genomes] |
rs325448 | 0.81[AMR][1000 genomes] |
rs325449 | 0.81[AMR][1000 genomes] |
rs325450 | 0.81[AMR][1000 genomes] |
rs327509 | 0.88[ASN][1000 genomes] |
rs327513 | 0.89[AFR][1000 genomes] |
rs327514 | 0.88[ASN][1000 genomes] |
rs327515 | 0.88[ASN][1000 genomes] |
rs327517 | 0.88[ASN][1000 genomes] |
rs327519 | 0.88[ASN][1000 genomes] |
rs327522 | 0.88[ASN][1000 genomes] |
rs391661 | 0.89[AFR][1000 genomes] |
rs452896 | 0.88[ASN][1000 genomes] |
rs4728078 | 0.81[AMR][1000 genomes] |
rs4731379 | 0.81[AMR][1000 genomes] |
rs4731382 | 0.81[AMR][1000 genomes] |
rs4731383 | 0.81[AMR][1000 genomes] |
rs4731384 | 0.81[AMR][1000 genomes] |
rs537972 | 0.88[ASN][1000 genomes] |
rs6467146 | 0.81[AMR][1000 genomes] |
rs6467147 | 0.86[AMR][1000 genomes] |
rs6467149 | 0.81[AMR][1000 genomes] |
rs6467150 | 0.81[AMR][1000 genomes] |
rs6467151 | 0.86[AMR][1000 genomes] |
rs676764 | 0.89[AFR][1000 genomes] |
rs6950211 | 0.81[AMR][1000 genomes] |
rs6979918 | 0.81[AMR][1000 genomes] |
rs698407 | 0.89[ASN][1000 genomes] |
rs698409 | 0.81[AMR][1000 genomes] |
rs712706 | 0.86[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs712708 | 0.84[ASN][1000 genomes] |
rs712709 | 0.89[ASN][1000 genomes] |
rs712710 | 0.89[ASN][1000 genomes] |
rs712711 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs712713 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs712714 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs712717 | 0.89[ASN][1000 genomes] |
rs712720 | 0.81[AMR][1000 genomes] |
rs73720863 | 0.88[ASN][1000 genomes] |
rs806126 | 0.89[ASN][1000 genomes] |
rs806163 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs806164 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs806165 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs806167 | 0.89[ASN][1000 genomes] |
rs806168 | 0.89[ASN][1000 genomes] |
rs806173 | 0.86[AMR][1000 genomes] |
rs809333 | 0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv831122 | chr7:127143207-127357885 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
2 | nsv1022385 | chr7:127246656-127971194 | Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
3 | nsv539120 | chr7:127246656-127971194 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
4 | nsv1016143 | chr7:127251359-127726762 | Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
5 | nsv1031658 | chr7:127266882-127376775 | Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:127276000-127284400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
2 | chr7:127276200-127281800 | Weak transcription | Placenta Amnion | Placenta Amnion |
3 | chr7:127276200-127282000 | Weak transcription | H9 Cell Line | embryonic stem cell |
4 | chr7:127276400-127281600 | Weak transcription | HepG2 | liver |
5 | chr7:127277000-127281800 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
6 | chr7:127278600-127279400 | Enhancers | Placenta | Placenta |