Variant report

Variant	rs8066508
Chromosome Location	chr17:38663717-38663718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38604656..38605228-chr17:38663389..38664265,3	MCF-7	breast:
2	chr17:38661625..38664406-chr17:38665546..38668023,2	MCF-7	breast:
3	chr17:38656765..38658696-chr17:38662629..38664768,2	MCF-7	breast:
4	chr17:38659946..38662385-chr17:38662915..38665154,2	MCF-7	breast:
5	chr17:38659526..38661040-chr17:38663296..38664889,2	K562	blood:
6	chr17:38656008..38658931-chr17:38662988..38665092,2	K562	blood:
7	chr17:38604656..38605228-chr17:38663389..38664265,2	MCF-7	breast:
8	chr17:38659540..38661048-chr17:38663220..38664889,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131746	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4092050	1.00[JPT][hapmap]
rs4890086	1.00[CEU][hapmap]
rs499490	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs594783	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs596960	1.00[JPT][hapmap]
rs7212543	1.00[CEU][hapmap]
rs7219622	0.86[JPT][hapmap]
rs8069091	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs8077724	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1335793	chr17:38663718-38663721	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38656600-38666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr17:38656600-38668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:38656800-38666000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr17:38656800-38668400	Weak transcription	Gastric	stomach
5	chr17:38657000-38666000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr17:38657000-38666000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr17:38658400-38665200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:38659000-38665000	Weak transcription	Hela-S3	cervix
9	chr17:38663000-38664600	Weak transcription	NHEK	skin
10	chr17:38663000-38666000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr17:38663000-38666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr17:38663000-38666200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr17:38663200-38665000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:38663200-38666000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr17:38663200-38666000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:38663400-38664400	Weak transcription	A549	lung
17	chr17:38663400-38665000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr17:38663400-38666000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr17:38663400-38666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr17:38663400-38666000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr17:38663400-38666000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr17:38663400-38666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr17:38663400-38667800	Weak transcription	Fetal Muscle Leg	muscle
24	chr17:38663600-38666000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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