Variant report

Variant	rs596960
Chromosome Location	chr17:38659258-38659259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4092050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4890086	1.00[CHB][hapmap]
rs4890087	1.00[EUR][1000 genomes]
rs499490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs594783	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6503543	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7217539	1.00[CEU][hapmap]
rs7219622	0.90[JPT][hapmap]
rs7221799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8066508	1.00[JPT][hapmap]
rs8069091	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs896135	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs896136	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs921394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9901908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38656600-38662600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:38656600-38666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr17:38656600-38668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:38656800-38666000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr17:38656800-38668400	Weak transcription	Gastric	stomach
6	chr17:38657000-38666000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr17:38657000-38666000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr17:38658400-38659400	Enhancers	NHEK	skin
9	chr17:38658400-38662400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr17:38658400-38662600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr17:38658400-38662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:38658400-38665200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr17:38658600-38659800	Weak transcription	A549	lung
14	chr17:38659000-38659400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr17:38659000-38661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr17:38659000-38665000	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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