Variant report

Variant	rs7217539
Chromosome Location	chr17:38661566-38661567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10451257	1.00[JPT][hapmap]
rs16965857	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16965864	0.80[ASW][hapmap];0.80[LWK][hapmap]
rs4092050	0.82[CEU][hapmap]
rs475298	0.82[CEU][hapmap]
rs56151683	0.93[AFR][1000 genomes]
rs596960	1.00[CEU][hapmap]
rs6503543	1.00[CEU][hapmap]
rs7221799	0.82[CEU][hapmap];0.83[TSI][hapmap]
rs72819664	1.00[EUR][1000 genomes]
rs72819665	1.00[EUR][1000 genomes]
rs896135	1.00[CEU][hapmap]
rs896136	1.00[CEU][hapmap]
rs921394	0.82[CEU][hapmap]
rs9894865	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9899509	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9901908	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38656600-38662600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:38656600-38666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr17:38656600-38668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:38656800-38666000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr17:38656800-38668400	Weak transcription	Gastric	stomach
6	chr17:38657000-38666000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr17:38657000-38666000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr17:38658400-38662400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr17:38658400-38662600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr17:38658400-38662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:38658400-38665200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr17:38659000-38661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr17:38659000-38665000	Weak transcription	Hela-S3	cervix
14	chr17:38659400-38662200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr17:38659400-38662600	Weak transcription	NHEK	skin
16	chr17:38660200-38662600	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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