Variant report

Variant	rs72819665
Chromosome Location	chr17:38665159-38665160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38663786..38666142-chr17:38671999..38674864,2	MCF-7	breast:
2	chr17:38640622..38642550-chr17:38663803..38666620,2	K562	blood:

Variant related genes	Relation type
ENSG00000266088	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17472276	1.00[AFR][1000 genomes]
rs56291600	1.00[AFR][1000 genomes]
rs7217539	1.00[EUR][1000 genomes]
rs72819636	1.00[AFR][1000 genomes]
rs72819640	1.00[AFR][1000 genomes]
rs72819643	1.00[AFR][1000 genomes]
rs72819648	1.00[AFR][1000 genomes]
rs72819653	1.00[AFR][1000 genomes]
rs72819659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72819661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72819664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38656600-38666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr17:38656600-38668000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:38656800-38666000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr17:38656800-38668400	Weak transcription	Gastric	stomach
5	chr17:38657000-38666000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr17:38657000-38666000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr17:38658400-38665200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr17:38663000-38666000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr17:38663000-38666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr17:38663000-38666200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr17:38663200-38666000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr17:38663200-38666000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr17:38663400-38666000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr17:38663400-38666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:38663400-38666000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:38663400-38666000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr17:38663400-38666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr17:38663400-38667800	Weak transcription	Fetal Muscle Leg	muscle
19	chr17:38663600-38666000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:38664400-38666000	Enhancers	A549	lung
21	chr17:38664600-38666000	Enhancers	NHEK	skin
22	chr17:38664800-38666400	Enhancers	Adipose Nuclei	Adipose
23	chr17:38665000-38665200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr17:38665000-38666000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:38665000-38666000	Enhancers	Hela-S3	cervix
26	chr17:38665000-38667000	Enhancers	Muscle Satellite Cultured Cells	--

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