Variant report

Variant	rs72819643
Chromosome Location	chr17:38630638-38630639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38627597..38631126-chr17:38634804..38638416,4	K562	blood:
2	chr17:38629230..38633367-chr17:38687189..38689523,3	MCF-7	breast:
3	chr17:38617634..38619166-chr17:38628984..38631978,2	MCF-7	breast:
4	chr17:38603659..38605432-chr17:38628580..38630648,2	MCF-7	breast:
5	chr17:38629814..38633387-chr17:38676751..38679736,4	MCF-7	breast:
6	chr17:38600239..38603035-chr17:38630474..38632189,2	MCF-7	breast:
7	chr17:38600754..38602507-chr17:38629659..38632634,3	K562	blood:
8	chr17:38598950..38601865-chr17:38628888..38632301,4	MCF-7	breast:
9	chr17:38598427..38603183-chr17:38627636..38631159,5	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNS4-2	chr17:38629806-38631541	NONHSAT053550

No data

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction
ENSG00000131746	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10153265	1.00[EUR][1000 genomes]
rs11078946	0.97[EUR][1000 genomes]
rs11078947	0.97[EUR][1000 genomes]
rs11871535	0.91[EUR][1000 genomes]
rs17472276	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56291600	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72819635	0.97[EUR][1000 genomes]
rs72819636	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72819638	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72819640	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72819648	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72819651	0.81[EUR][1000 genomes]
rs72819653	1.00[AFR][1000 genomes]
rs72819659	1.00[AFR][1000 genomes]
rs72819661	1.00[AFR][1000 genomes]
rs72819664	1.00[AFR][1000 genomes]
rs72819665	1.00[AFR][1000 genomes]
rs8078319	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38619200-38632000	Weak transcription	Right Atrium	heart
2	chr17:38620600-38632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr17:38626600-38631600	Enhancers	Fetal Stomach	stomach
4	chr17:38627000-38633000	Enhancers	Rectal Smooth Muscle	rectum
5	chr17:38627200-38631800	Enhancers	Placenta	Placenta
6	chr17:38627200-38631800	Enhancers	Hela-S3	cervix
7	chr17:38627200-38632000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr17:38627200-38632400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr17:38627200-38633000	Enhancers	Colon Smooth Muscle	Colon
10	chr17:38627200-38633400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr17:38627200-38633400	Enhancers	Ovary	ovary
12	chr17:38627400-38633200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr17:38627400-38646200	Weak transcription	Gastric	stomach
14	chr17:38627600-38630800	Weak transcription	Spleen	Spleen
15	chr17:38627600-38632800	Enhancers	Liver	Liver
16	chr17:38627800-38630800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr17:38627800-38630800	Enhancers	A549	lung
18	chr17:38627800-38631000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr17:38627800-38631400	Weak transcription	Fetal Lung	lung
20	chr17:38628400-38631000	Weak transcription	Fetal Intestine Small	intestine
21	chr17:38628600-38630800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr17:38628600-38632800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr17:38628800-38631800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr17:38628800-38632000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr17:38628800-38632200	Weak transcription	NH-A	brain
26	chr17:38628800-38636400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr17:38629000-38630800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr17:38629000-38631800	Weak transcription	NHLF	lung
29	chr17:38629000-38631800	Weak transcription	Osteobl	bone
30	chr17:38629000-38632000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr17:38629200-38632800	Enhancers	Stomach Mucosa	stomach
32	chr17:38629400-38632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:38629400-38632000	Weak transcription	NHDF-Ad	bronchial
34	chr17:38629800-38632400	Enhancers	Fetal Intestine Large	intestine
35	chr17:38629800-38632800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:38629800-38632800	Weak transcription	NHEK	skin
37	chr17:38629800-38633000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr17:38630000-38630800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr17:38630000-38631800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr17:38630000-38631800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr17:38630000-38631800	Weak transcription	HMEC	breast
42	chr17:38630000-38632400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr17:38630000-38632400	Enhancers	HepG2	liver
44	chr17:38630200-38630800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr17:38630200-38632400	Enhancers	H1 Cell Line	embryonic stem cell
46	chr17:38630200-38632400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr17:38630200-38632400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr17:38630200-38635800	Weak transcription	Esophagus	oesophagus
49	chr17:38630200-38636200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:38630400-38631000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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