Variant report

Variant	rs72819635
Chromosome Location	chr17:38621007-38621008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38620514..38622716-chr17:38686553..38688120,2	K562	blood:
2	chr17:38619664..38621845-chr17:38716492..38718933,2	MCF-7	breast:
3	chr17:38617849..38619385-chr17:38619757..38622445,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126353	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10153265	0.97[EUR][1000 genomes]
rs11078946	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11078947	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11871535	0.94[EUR][1000 genomes]
rs17472276	0.91[EUR][1000 genomes]
rs56291600	0.91[EUR][1000 genomes]
rs72819636	1.00[EUR][1000 genomes]
rs72819638	1.00[EUR][1000 genomes]
rs72819640	0.97[EUR][1000 genomes]
rs72819643	0.97[EUR][1000 genomes]
rs72819648	0.91[EUR][1000 genomes]
rs8078319	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38614000-38623400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr17:38614200-38629200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:38615400-38621400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:38615400-38624600	Weak transcription	HSMM	muscle
5	chr17:38618000-38621600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr17:38618000-38622600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:38618800-38621200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr17:38619000-38627200	Weak transcription	Spleen	Spleen
9	chr17:38619200-38621200	Enhancers	A549	lung
10	chr17:38619200-38627200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:38619200-38632000	Weak transcription	Right Atrium	heart
12	chr17:38619600-38621200	Enhancers	Stomach Smooth Muscle	stomach
13	chr17:38619600-38627200	Weak transcription	NH-A	brain
14	chr17:38619600-38627400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr17:38619800-38627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr17:38620400-38621200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:38620600-38627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:38620600-38627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr17:38620600-38627200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:38620600-38632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr17:38621000-38621200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr17:38621000-38621200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr17:38621000-38624800	Weak transcription	Fetal Kidney	kidney
24	chr17:38621000-38626200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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