Variant report

Variant	rs11871535
Chromosome Location	chr17:38627167-38627168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38625455..38628892-chr17:38681248..38683657,3	K562	blood:
2	chr17:38626735..38629399-chr17:38631945..38633834,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266088	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10153265	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11078946	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11078947	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17472276	0.85[EUR][1000 genomes]
rs56291600	0.85[EUR][1000 genomes]
rs72819635	0.94[EUR][1000 genomes]
rs72819636	0.94[EUR][1000 genomes]
rs72819638	0.94[EUR][1000 genomes]
rs72819640	0.91[EUR][1000 genomes]
rs72819643	0.91[EUR][1000 genomes]
rs72819648	0.85[EUR][1000 genomes]
rs8078319	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38614200-38629200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr17:38619000-38627200	Weak transcription	Spleen	Spleen
3	chr17:38619200-38627200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:38619200-38632000	Weak transcription	Right Atrium	heart
5	chr17:38619600-38627200	Weak transcription	NH-A	brain
6	chr17:38619600-38627400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr17:38619800-38627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr17:38620600-38627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr17:38620600-38627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:38620600-38627200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:38620600-38632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:38621200-38627400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr17:38621200-38627400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr17:38621600-38627400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr17:38623000-38627200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr17:38623000-38627400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:38623200-38627200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:38625400-38628800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr17:38625800-38627200	Enhancers	A549	lung
20	chr17:38626200-38628000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr17:38626400-38628800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr17:38626400-38629800	Enhancers	NHEK	skin
23	chr17:38626600-38627200	Enhancers	Stomach Smooth Muscle	stomach
24	chr17:38626600-38629000	Enhancers	Osteobl	bone
25	chr17:38626600-38630000	Enhancers	HMEC	breast
26	chr17:38626600-38631600	Enhancers	Fetal Stomach	stomach
27	chr17:38626800-38627600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr17:38627000-38627200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr17:38627000-38633000	Enhancers	Rectal Smooth Muscle	rectum

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