Variant report

Variant	rs8074903
Chromosome Location	chr17:46037866-46037867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:46037668-46037951	MCF-7	breast:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46037386..46040340-chr17:46123583..46126115,2	MCF-7	breast:
2	chr17:46037638..46039949-chr17:46100422..46103113,2	MCF-7	breast:
3	chr17:46037650..46039403-chr17:46103003..46105504,2	K562	blood:
4	chr17:46035894..46038484-chr17:46099628..46103418,4	MCF-7	breast:
5	chr17:46033549..46039001-chr17:46046732..46050276,6	K562	blood:
6	chr17:45907437..45910086-chr17:46037370..46039885,2	MCF-7	breast:
7	chr17:45969751..45975935-chr17:46032072..46038613,14	MCF-7	breast:
8	chr17:46009429..46012200-chr17:46035247..46037959,2	MCF-7	breast:

No data

Variant related genes	Relation type
PRR15L	TF binding region
ENSG00000266601	Chromatin interaction
ENSG00000264920	Chromatin interaction
ENSG00000082641	Chromatin interaction
ENSG00000141294	Chromatin interaction
ENSG00000108465	Chromatin interaction
ENSG00000263412	Chromatin interaction
ENSG00000167182	Chromatin interaction
ENSG00000159111	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57519584	1.00[EUR][1000 genomes]
rs60171572	1.00[EUR][1000 genomes]
rs8082116	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv908575	chr17:45957591-46049533	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46019800-46047600	Weak transcription	Aorta	Aorta
2	chr17:46027200-46047200	Weak transcription	Spleen	Spleen
3	chr17:46027600-46047400	Weak transcription	Right Ventricle	heart
4	chr17:46027600-46047600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr17:46028000-46047400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr17:46028000-46047600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:46030200-46045800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr17:46031400-46039000	Weak transcription	Primary T cells from cord blood	blood
9	chr17:46035000-46047400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr17:46035200-46038600	Weak transcription	Small Intestine	intestine
11	chr17:46035400-46038000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr17:46035600-46038000	Enhancers	Esophagus	oesophagus
13	chr17:46036000-46047200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr17:46036200-46043400	Weak transcription	A549	lung
15	chr17:46036400-46039200	Enhancers	Pancreas	Pancrea
16	chr17:46036600-46047800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:46036800-46038400	Enhancers	HepG2	liver
18	chr17:46036800-46047400	Weak transcription	Thymus	Thymus
19	chr17:46037000-46038000	Enhancers	Colonic Mucosa	Colon
20	chr17:46037000-46038400	Weak transcription	Gastric	stomach
21	chr17:46037000-46038600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr17:46037200-46038000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr17:46037200-46038000	Flanking Active TSS	Stomach Mucosa	stomach
24	chr17:46037600-46038000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:46037600-46038000	Enhancers	Fetal Heart	heart
26	chr17:46037600-46038000	Enhancers	K562	blood
27	chr17:46037600-46038200	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr17:46037800-46038000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr17:46037800-46038000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr17:46037800-46038000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr17:46037800-46038000	Enhancers	NHEK	skin
32	chr17:46037800-46038200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr17:46037800-46042400	Weak transcription	Placenta	Placenta
34	chr17:46037800-46047400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr17:46037800-46047400	Enhancers	Fetal Intestine Small	intestine
36	chr17:46037800-46047800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links