Variant report

Variant	rs807709
Chromosome Location	chr6:24297303-24297304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12189861	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12201442	0.88[ASN][1000 genomes]
rs12205083	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12215082	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1541190	0.88[ASN][1000 genomes]
rs1591997	0.88[ASN][1000 genomes]
rs2792682	0.92[ASN][1000 genomes]
rs28993075	0.88[ASN][1000 genomes]
rs28993077	0.88[ASN][1000 genomes]
rs28993078	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28993079	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2994542	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789226	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3846827	0.80[ASN][1000 genomes]
rs4612153	0.88[ASN][1000 genomes]
rs6907864	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6923278	0.88[ASN][1000 genomes]
rs6923473	0.88[ASN][1000 genomes]
rs72830866	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs807699	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs807723	0.84[ASN][1000 genomes]
rs807724	0.92[ASN][1000 genomes]
rs807726	0.89[ASN][1000 genomes]
rs9460983	0.88[ASN][1000 genomes]
rs9460984	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
2	chr6:24292200-24302000	Weak transcription	A549	lung
3	chr6:24294600-24297400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24294800-24298000	Weak transcription	HepG2	liver
6	chr6:24296200-24297800	ZNF genes & repeats	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links