Variant report

Variant	rs9460983
Chromosome Location	chr6:24246871-24246872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12189861	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190103	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190202	0.95[EUR][1000 genomes]
rs12197537	0.95[EUR][1000 genomes]
rs12199068	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12201442	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205083	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215082	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541190	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591997	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792682	0.88[ASN][1000 genomes]
rs28993075	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28993077	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28993078	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28993079	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2994542	0.92[ASN][1000 genomes]
rs3789226	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846827	0.91[ASN][1000 genomes]
rs3846828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4612153	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907864	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6923278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72830866	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs807699	0.92[ASN][1000 genomes]
rs807709	0.88[ASN][1000 genomes]
rs807724	0.88[ASN][1000 genomes]
rs807726	0.85[ASN][1000 genomes]
rs9295616	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9460976	0.94[EUR][1000 genomes]
rs9460977	0.94[EUR][1000 genomes]
rs9460981	0.86[ASN][1000 genomes]
rs9460984	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467076	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9467078	0.94[EUR][1000 genomes]
rs9467079	0.94[EUR][1000 genomes]
rs9467081	0.94[EUR][1000 genomes]
rs9467090	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24241200-24250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
4	chr6:24245400-24250000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24245400-24250400	Weak transcription	Pancreas	Pancrea
6	chr6:24245800-24251000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:24245800-24251600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:24246000-24249800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:24246000-24249800	Weak transcription	HepG2	liver
10	chr6:24246000-24250400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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