Variant report

Variant	rs9460981
Chromosome Location	chr6:24237404-24237405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12189861	0.86[ASN][1000 genomes]
rs12190103	1.00[ASN][1000 genomes]
rs12199068	1.00[ASN][1000 genomes]
rs12201442	0.86[ASN][1000 genomes]
rs12205083	0.86[ASN][1000 genomes]
rs12215082	0.86[ASN][1000 genomes]
rs1541190	0.86[ASN][1000 genomes]
rs1591997	0.86[ASN][1000 genomes]
rs28993075	0.86[ASN][1000 genomes]
rs28993077	0.86[ASN][1000 genomes]
rs28993078	0.86[ASN][1000 genomes]
rs28993079	0.86[ASN][1000 genomes]
rs3789226	0.86[ASN][1000 genomes]
rs3846828	0.95[ASN][1000 genomes]
rs4612153	0.86[ASN][1000 genomes]
rs6907864	0.81[ASN][1000 genomes]
rs6923278	0.86[ASN][1000 genomes]
rs6923473	0.86[ASN][1000 genomes]
rs72830866	0.86[ASN][1000 genomes]
rs9295616	1.00[ASN][1000 genomes]
rs9460983	0.86[ASN][1000 genomes]
rs9460984	0.86[ASN][1000 genomes]
rs9467090	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24228800-24245600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24229400-24243400	Weak transcription	Fetal Kidney	kidney
3	chr6:24230200-24242400	Weak transcription	Pancreas	Pancrea
4	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24235000-24240800	Weak transcription	HepG2	liver
6	chr6:24237000-24237800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:24237200-24238000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:24237400-24237600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links