Variant report

Variant	rs12190202
Chromosome Location	chr6:24225170-24225171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12189861	0.90[EUR][1000 genomes]
rs12190103	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12197537	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12199068	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12201442	0.93[EUR][1000 genomes]
rs12205083	0.91[EUR][1000 genomes]
rs12215082	0.89[EUR][1000 genomes]
rs1541190	0.96[EUR][1000 genomes]
rs1591997	0.97[EUR][1000 genomes]
rs28993075	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28993077	0.95[EUR][1000 genomes]
rs28993078	0.91[EUR][1000 genomes]
rs28993079	0.91[EUR][1000 genomes]
rs3789226	0.89[EUR][1000 genomes]
rs3846828	0.85[EUR][1000 genomes]
rs4612153	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6907864	0.88[EUR][1000 genomes]
rs6923278	0.95[EUR][1000 genomes]
rs6923473	0.95[EUR][1000 genomes]
rs72830866	0.89[EUR][1000 genomes]
rs9295616	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9460976	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9460977	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460983	0.95[EUR][1000 genomes]
rs9460984	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9467076	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9467078	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9467079	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9467081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467087	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9467090	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
3	chr6:24214600-24235400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24217800-24231600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:24224800-24228800	Strong transcription	HepG2	liver
6	chr6:24225000-24229000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:24225000-24229200	Weak transcription	Pancreas	Pancrea

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