Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24211897..24214693-chr6:24215631..24218081,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12189861	0.89[EUR][1000 genomes]
rs12190103	0.96[EUR][1000 genomes]
rs12190202	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12197537	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12199068	0.95[EUR][1000 genomes]
rs12201442	0.91[EUR][1000 genomes]
rs12205083	0.90[EUR][1000 genomes]
rs12215082	0.88[EUR][1000 genomes]
rs1541190	0.95[EUR][1000 genomes]
rs1591997	0.96[EUR][1000 genomes]
rs28993075	0.94[EUR][1000 genomes]
rs28993077	0.94[EUR][1000 genomes]
rs28993078	0.90[EUR][1000 genomes]
rs28993079	0.90[EUR][1000 genomes]
rs3789226	0.88[EUR][1000 genomes]
rs3846828	0.84[EUR][1000 genomes]
rs4612153	0.95[EUR][1000 genomes]
rs6907864	0.87[EUR][1000 genomes]
rs6923278	0.94[EUR][1000 genomes]
rs6923473	0.94[EUR][1000 genomes]
rs72830866	0.88[EUR][1000 genomes]
rs9295616	0.96[EUR][1000 genomes]
rs9460977	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9460983	0.94[EUR][1000 genomes]
rs9460984	0.95[EUR][1000 genomes]
rs9467076	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9467078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467079	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467081	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467090	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
2	chr6:24206200-24231400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24206800-24227600	Weak transcription	Fetal Kidney	kidney
4	chr6:24210400-24215400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:24212800-24213200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:24212800-24214800	Weak transcription	HepG2	liver

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