Variant report

Variant	rs808352
Chromosome Location	chr10:116490155-116490156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116481771..116484398-chr10:116487848..116490311,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10885601	0.92[ASN][1000 genomes]
rs10885603	0.87[ASN][1000 genomes]
rs11196903	0.80[ASN][1000 genomes]
rs11196904	0.80[ASN][1000 genomes]
rs703349	0.81[ASN][1000 genomes]
rs7080397	0.80[ASN][1000 genomes]
rs7912645	0.80[ASN][1000 genomes]
rs808251	0.82[ASN][1000 genomes]
rs808263	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs808294	0.81[ASN][1000 genomes]
rs808295	0.81[ASN][1000 genomes]
rs808296	0.81[ASN][1000 genomes]
rs808298	0.81[ASN][1000 genomes]
rs808301	0.85[ASN][1000 genomes]
rs808305	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs808306	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs808307	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs808314	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs808322	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs808332	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs808340	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs808342	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs808350	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs808351	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs808353	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs808355	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs808357	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116483400-116493800	Weak transcription	Right Atrium	heart
2	chr10:116486600-116497000	Weak transcription	Lung	lung
3	chr10:116486800-116494400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:116486800-116514600	Weak transcription	Pancreas	Pancrea
5	chr10:116487000-116493200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:116487200-116492600	Weak transcription	Liver	Liver
7	chr10:116488800-116490200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:116488800-116490800	Enhancers	Fetal Heart	heart
9	chr10:116489000-116494400	Weak transcription	Gastric	stomach
10	chr10:116489200-116493800	Weak transcription	Left Ventricle	heart
11	chr10:116489200-116493800	Weak transcription	Right Ventricle	heart
12	chr10:116489600-116492800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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