Variant report

Variant	rs8086449
Chromosome Location	chr18:45659732-45659733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45658580..45662145-chr18:45664603..45667810,4	MCF-7	breast:
2	chr18:45650799..45652608-chr18:45657316..45660495,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11660595	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11663174	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12454335	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4258692	0.83[ASN][1000 genomes]
rs4267393	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4636987	0.82[EUR][1000 genomes]
rs7236506	0.80[EUR][1000 genomes]
rs7505482	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8098508	0.82[EUR][1000 genomes]
rs9646522	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
2	chr18:45650600-45660600	Weak transcription	Fetal Intestine Small	intestine
3	chr18:45656800-45661200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr18:45658600-45659800	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr18:45658800-45661000	Enhancers	Fetal Kidney	kidney
6	chr18:45658800-45662000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr18:45659000-45660200	Enhancers	Fetal Muscle Leg	muscle
8	chr18:45659000-45660600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr18:45659000-45660600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr18:45659000-45661400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr18:45659200-45659800	Enhancers	Gastric	stomach
12	chr18:45659200-45660400	Enhancers	Fetal Intestine Large	intestine
13	chr18:45659200-45660800	Enhancers	Fetal Stomach	stomach
14	chr18:45659200-45661200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr18:45659400-45659800	Flanking Active TSS	Colonic Mucosa	Colon
16	chr18:45659400-45659800	Enhancers	Esophagus	oesophagus
17	chr18:45659400-45659800	Enhancers	Lung	lung
18	chr18:45659400-45659800	Enhancers	Pancreas	Pancrea
19	chr18:45659400-45660000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr18:45659400-45660400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr18:45659400-45660400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:45659400-45660400	Enhancers	Fetal Muscle Trunk	muscle
23	chr18:45659400-45660400	Enhancers	Placenta	Placenta
24	chr18:45659400-45660600	Flanking Active TSS	Hela-S3	cervix
25	chr18:45659400-45661000	Enhancers	NHEK	skin
26	chr18:45659400-45661200	Enhancers	HMEC	breast
27	chr18:45659400-45661400	Enhancers	Duodenum Mucosa	Duodenum
28	chr18:45659400-45661600	Enhancers	Ovary	ovary
29	chr18:45659600-45660200	Weak transcription	Liver	Liver
30	chr18:45659600-45660200	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr18:45659600-45660600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:45659600-45660600	Enhancers	Fetal Lung	lung
33	chr18:45659600-45661200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr18:45659600-45662000	Enhancers	Stomach Mucosa	stomach

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