Variant report

Variant	rs4258692
Chromosome Location	chr18:45673443-45673444
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11660595	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11663174	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12454335	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4267393	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4281790	0.84[ASN][1000 genomes]
rs55707477	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62087433	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62087434	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7505482	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8086449	0.83[ASN][1000 genomes]
rs9646522	0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs9789091	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9953128	0.86[EUR][1000 genomes]
rs9967534	0.82[JPT][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv517835	chr18:45672940-45678479	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45663800-45679800	Weak transcription	Aorta	Aorta
2	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45669600-45678200	Weak transcription	Spleen	Spleen
4	chr18:45669800-45675000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr18:45670000-45674800	Weak transcription	Stomach Mucosa	stomach
6	chr18:45670200-45675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:45670400-45674600	Weak transcription	Hela-S3	cervix
8	chr18:45670400-45678000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:45671600-45675800	Weak transcription	Placenta	Placenta
10	chr18:45672000-45679200	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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