Variant report

Variant	rs9953128
Chromosome Location	chr18:45696509-45696510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11663174	0.90[ASN][1000 genomes]
rs12454335	0.89[ASN][1000 genomes]
rs12606239	0.80[ASN][1000 genomes]
rs34962603	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4258692	0.86[EUR][1000 genomes]
rs4281790	0.86[ASN][1000 genomes]
rs55707477	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62087433	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62087434	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7236506	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9646522	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9789091	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9967534	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45688400-45699200	Enhancers	Spleen	Spleen
2	chr18:45688800-45696600	Enhancers	Fetal Intestine Small	intestine
3	chr18:45688800-45696800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr18:45688800-45697000	Enhancers	Fetal Intestine Large	intestine
5	chr18:45688800-45697000	Enhancers	Ovary	ovary
6	chr18:45693400-45704400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:45693800-45699800	Weak transcription	Esophagus	oesophagus
8	chr18:45694600-45705200	Weak transcription	Right Ventricle	heart
9	chr18:45694800-45696800	Enhancers	Stomach Mucosa	stomach
10	chr18:45695600-45699000	Weak transcription	Pancreas	Pancrea
11	chr18:45695600-45699600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr18:45695600-45699800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr18:45695800-45699800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr18:45696000-45707400	Weak transcription	Gastric	stomach
15	chr18:45696400-45698200	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links