Variant report

Variant	rs55707477
Chromosome Location	chr18:45678927-45678928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45677575..45679860-chr18:45748750..45750379,2	MCF-7	breast:
2	chr18:45666537..45669194-chr18:45677559..45680379,3	MCF-7	breast:
3	chr18:45678532..45681545-chr18:45682420..45685312,3	MCF-7	breast:
4	chr18:45674100..45677757-chr18:45678763..45682231,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11660595	0.83[AMR][1000 genomes]
rs11663174	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12454335	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12606239	0.89[ASN][1000 genomes]
rs34962603	0.91[ASN][1000 genomes]
rs4258692	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4267393	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4281790	0.97[ASN][1000 genomes]
rs62087433	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087434	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7236506	0.91[ASN][1000 genomes]
rs7505482	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9646522	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9789091	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9953128	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9967534	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45663800-45679800	Weak transcription	Aorta	Aorta
2	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45672000-45679200	Weak transcription	Esophagus	oesophagus
4	chr18:45675800-45682800	Enhancers	Placenta	Placenta
5	chr18:45676000-45679200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr18:45676000-45679800	Weak transcription	Pancreas	Pancrea
7	chr18:45677200-45681200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:45677200-45682200	Enhancers	Hela-S3	cervix
9	chr18:45677400-45681800	Enhancers	Stomach Mucosa	stomach
10	chr18:45677600-45680000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr18:45677800-45680800	Enhancers	Fetal Intestine Large	intestine
12	chr18:45677800-45680800	Enhancers	Gastric	stomach
13	chr18:45677800-45682200	Enhancers	Ovary	ovary
14	chr18:45678000-45680600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr18:45678000-45681600	Enhancers	Liver	Liver
16	chr18:45678000-45681800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr18:45678000-45684600	Enhancers	HMEC	breast
18	chr18:45678200-45680200	Enhancers	HepG2	liver
19	chr18:45678200-45681600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr18:45678200-45684400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr18:45678400-45679200	Weak transcription	Right Atrium	heart
22	chr18:45678400-45680200	Weak transcription	Left Ventricle	heart
23	chr18:45678400-45680200	Weak transcription	Lung	lung
24	chr18:45678400-45687200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr18:45678600-45679600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr18:45678600-45679800	Weak transcription	Spleen	Spleen
27	chr18:45678600-45680000	Weak transcription	Fetal Intestine Small	intestine
28	chr18:45678600-45680000	Weak transcription	HSMMtube	muscle
29	chr18:45678600-45680200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr18:45678600-45680200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr18:45678600-45680200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr18:45678600-45680400	Weak transcription	Colonic Mucosa	Colon
33	chr18:45678600-45686800	Weak transcription	Fetal Muscle Leg	muscle
34	chr18:45678800-45680600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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