Variant report

Variant	rs34962603
Chromosome Location	chr18:45694950-45694951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11663174	0.92[ASN][1000 genomes]
rs12454335	0.91[ASN][1000 genomes]
rs12606239	0.82[ASN][1000 genomes]
rs4281790	0.88[ASN][1000 genomes]
rs55707477	0.91[ASN][1000 genomes]
rs62087433	0.90[ASN][1000 genomes]
rs62087434	0.91[ASN][1000 genomes]
rs7236506	1.00[ASN][1000 genomes]
rs9646522	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9789091	0.92[ASN][1000 genomes]
rs9953128	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9967534	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45688400-45699200	Enhancers	Spleen	Spleen
2	chr18:45688800-45695600	Enhancers	Placenta	Placenta
3	chr18:45688800-45696600	Enhancers	Fetal Intestine Small	intestine
4	chr18:45688800-45696800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr18:45688800-45697000	Enhancers	Fetal Intestine Large	intestine
6	chr18:45688800-45697000	Enhancers	Ovary	ovary
7	chr18:45689200-45695800	Enhancers	Duodenum Mucosa	Duodenum
8	chr18:45690200-45695800	Enhancers	Hela-S3	cervix
9	chr18:45692600-45695400	Enhancers	Liver	Liver
10	chr18:45692600-45695600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:45692800-45696000	Enhancers	Gastric	stomach
12	chr18:45693000-45695200	Enhancers	Fetal Lung	lung
13	chr18:45693400-45695400	Enhancers	Fetal Heart	heart
14	chr18:45693400-45704400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr18:45693800-45695000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr18:45693800-45695600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr18:45693800-45699800	Weak transcription	Esophagus	oesophagus
18	chr18:45694000-45695200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr18:45694400-45695600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr18:45694600-45695200	Weak transcription	Lung	lung
21	chr18:45694600-45695400	Weak transcription	Pancreas	Pancrea
22	chr18:45694600-45695600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:45694600-45695600	Enhancers	HepG2	liver
24	chr18:45694600-45705200	Weak transcription	Right Ventricle	heart
25	chr18:45694800-45695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr18:45694800-45695600	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr18:45694800-45696800	Enhancers	Stomach Mucosa	stomach

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