Variant report

Variant	rs62087434
Chromosome Location	chr18:45686458-45686459
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45680562..45685568-chr18:45685976..45689929,7	MCF-7	breast:
2	chr18:45563962..45566776-chr18:45685192..45687168,2	MCF-7	breast:
3	chr18:45685443..45688352-chr18:45694404..45697292,3	MCF-7	breast:
4	chr18:45555494..45557738-chr18:45683737..45686680,2	MCF-7	breast:
5	chr18:45679021..45685767-chr18:45685990..45688234,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206944	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11663174	0.97[ASN][1000 genomes]
rs12454335	0.97[ASN][1000 genomes]
rs12606239	0.86[ASN][1000 genomes]
rs34962603	0.91[ASN][1000 genomes]
rs4258692	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4267393	0.83[ASN][1000 genomes]
rs4281790	0.93[ASN][1000 genomes]
rs55707477	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62087433	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7236506	0.91[ASN][1000 genomes]
rs7505482	0.83[ASN][1000 genomes]
rs9646522	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9789091	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9953128	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9967534	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45678400-45687200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:45678600-45686800	Weak transcription	Fetal Muscle Leg	muscle
3	chr18:45680000-45687000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:45680400-45687000	Weak transcription	HSMMtube	muscle
5	chr18:45680800-45687000	Weak transcription	Fetal Intestine Small	intestine
6	chr18:45680800-45687200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr18:45680800-45687800	Weak transcription	Lung	lung
8	chr18:45681400-45687200	Weak transcription	Spleen	Spleen
9	chr18:45681600-45687000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr18:45681600-45687600	Weak transcription	Liver	Liver
11	chr18:45682200-45686600	Weak transcription	Ovary	ovary
12	chr18:45682200-45686800	Enhancers	Stomach Mucosa	stomach
13	chr18:45684000-45687400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr18:45684800-45687400	Weak transcription	Pancreas	Pancrea
15	chr18:45685800-45686600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr18:45685800-45686800	Enhancers	HepG2	liver
17	chr18:45685800-45687200	Enhancers	HMEC	breast
18	chr18:45685800-45687400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr18:45685800-45687400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr18:45685800-45687400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr18:45686000-45687200	Enhancers	Fetal Muscle Trunk	muscle
22	chr18:45686000-45687600	Enhancers	Esophagus	oesophagus
23	chr18:45686200-45687000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr18:45686200-45687000	Weak transcription	Fetal Intestine Large	intestine
25	chr18:45686200-45687000	Enhancers	NHEK	skin
26	chr18:45686200-45687200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr18:45686400-45686800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr18:45686400-45686800	Weak transcription	Colonic Mucosa	Colon
29	chr18:45686400-45686800	Enhancers	Hela-S3	cervix
30	chr18:45686400-45687200	Enhancers	Gastric	stomach
31	chr18:45686400-45687400	Enhancers	Brain Hippocampus Middle	brain

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