Variant report

Variant	rs8088306
Chromosome Location	chr18:43869179-43869180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11082519	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12457516	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4243279	0.86[EUR][1000 genomes]
rs4890635	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8087419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9961457	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8088306	C18orf25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr18:43852200-43879000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr18:43853000-43877800	Weak transcription	Primary T cells from cord blood	blood
4	chr18:43857000-43877800	Weak transcription	Aorta	Aorta
5	chr18:43859200-43869400	Weak transcription	Left Ventricle	heart
6	chr18:43860400-43873000	Weak transcription	Fetal Heart	heart
7	chr18:43862400-43870200	Weak transcription	Liver	Liver
8	chr18:43863600-43870600	Weak transcription	Spleen	Spleen
9	chr18:43864400-43869800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr18:43864400-43873400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr18:43869000-43869600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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