Variant report

Variant	rs11082519
Chromosome Location	chr18:43860477-43860478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12457516	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12608232	0.88[ASN][1000 genomes]
rs12962951	0.90[ASN][1000 genomes]
rs12963787	0.92[ASN][1000 genomes]
rs1808946	0.93[ASN][1000 genomes]
rs36191490	0.93[ASN][1000 genomes]
rs4243279	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4335852	0.82[ASN][1000 genomes]
rs4453594	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs4574015	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs4890317	0.95[CHB][hapmap];0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs4890319	0.95[CHB][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs4890320	0.93[ASN][1000 genomes]
rs4890626	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs4890631	0.93[ASN][1000 genomes]
rs4890633	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs4890634	0.93[ASN][1000 genomes]
rs4890635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62098160	0.91[ASN][1000 genomes]
rs6507677	0.82[ASN][1000 genomes]
rs6507682	0.82[ASN][1000 genomes]
rs6507690	0.91[ASN][1000 genomes]
rs6507691	0.91[ASN][1000 genomes]
rs6507693	0.93[ASN][1000 genomes]
rs718514	0.94[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs7228365	0.95[CHB][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs7230154	0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs7230995	0.90[ASN][1000 genomes]
rs7231430	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs8084829	0.85[ASN][1000 genomes]
rs8087419	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8088306	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8093407	0.93[ASN][1000 genomes]
rs8094070	0.93[ASN][1000 genomes]
rs8095799	0.88[ASN][1000 genomes]
rs8098751	0.93[ASN][1000 genomes]
rs8099202	0.95[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs9675387	0.94[CHB][hapmap];0.92[ASN][1000 genomes]
rs9807157	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs9944767	0.82[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs9944836	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs9948282	0.88[ASN][1000 genomes]
rs9951624	0.93[ASN][1000 genomes]
rs9952654	0.93[ASN][1000 genomes]
rs9956574	0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs9959813	0.82[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs9959905	0.92[ASN][1000 genomes]
rs9960378	0.92[ASN][1000 genomes]
rs9961457	0.86[EUR][1000 genomes]
rs9963153	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11082519	C18orf25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43831400-43863200	Weak transcription	Fetal Intestine Small	intestine
2	chr18:43841000-43861400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr18:43841000-43864200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr18:43844200-43861400	Weak transcription	Hela-S3	cervix
6	chr18:43845000-43861400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr18:43845600-43863000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr18:43845600-43863600	Weak transcription	Brain Anterior Caudate	brain
9	chr18:43847200-43863200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:43847800-43861200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr18:43849000-43861200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr18:43849400-43861400	Weak transcription	Liver	Liver
13	chr18:43852200-43879000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr18:43853000-43877800	Weak transcription	Primary T cells from cord blood	blood
15	chr18:43854400-43863000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr18:43854400-43863200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr18:43854400-43863200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr18:43854600-43861400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:43854600-43863000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr18:43855400-43863200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr18:43855600-43863000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr18:43857000-43877800	Weak transcription	Aorta	Aorta
23	chr18:43858200-43863000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr18:43858400-43863200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr18:43858600-43861400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr18:43858800-43861200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr18:43858800-43862800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr18:43858800-43863000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr18:43858800-43863000	Weak transcription	Psoas Muscle	Psoas
30	chr18:43859000-43861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr18:43859000-43861400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr18:43859000-43861600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr18:43859000-43863200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr18:43859000-43863200	Weak transcription	Spleen	Spleen
35	chr18:43859000-43863400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr18:43859200-43861200	Weak transcription	NH-A	brain
37	chr18:43859200-43861400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr18:43859200-43861400	Weak transcription	Osteobl	bone
39	chr18:43859200-43861600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr18:43859200-43863000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr18:43859200-43863000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr18:43859200-43869400	Weak transcription	Left Ventricle	heart
43	chr18:43859400-43861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr18:43859400-43861400	Weak transcription	HSMM	muscle
45	chr18:43859400-43862600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr18:43859400-43863000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr18:43859600-43860800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr18:43859600-43861600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr18:43859800-43862600	Weak transcription	Fetal Muscle Leg	muscle
50	chr18:43860200-43861400	Weak transcription	K562	blood

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