Variant report

Variant	rs8095799
Chromosome Location	chr18:43779319-43779320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43778384..43781294-chr18:43789477..43791709,2	MCF-7	breast:
2	chr18:43752608..43755575-chr18:43778145..43779895,3	K562	blood:
3	chr18:43753760..43755478-chr18:43779132..43781446,2	MCF-7	breast:
4	chr18:43753816..43756411-chr18:43778917..43781322,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs11082514	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11082518	0.93[EUR][1000 genomes]
rs11082519	0.88[ASN][1000 genomes]
rs12457516	0.83[ASN][1000 genomes]
rs12457740	0.87[EUR][1000 genomes]
rs12605945	0.95[EUR][1000 genomes]
rs12607898	0.96[EUR][1000 genomes]
rs12608232	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12709736	0.95[EUR][1000 genomes]
rs12962307	0.95[EUR][1000 genomes]
rs12962951	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12963787	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12963943	0.90[EUR][1000 genomes]
rs12969147	0.95[EUR][1000 genomes]
rs13381496	0.87[EUR][1000 genomes]
rs13381515	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13381523	0.88[EUR][1000 genomes]
rs13381525	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13381529	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1808946	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36191490	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3744858	0.93[EUR][1000 genomes]
rs4335852	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4453594	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4453596	0.88[EUR][1000 genomes]
rs4542747	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4574015	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4627465	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4890317	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4890319	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4890320	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4890321	0.93[EUR][1000 genomes]
rs4890626	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4890628	0.96[EUR][1000 genomes]
rs4890629	0.96[EUR][1000 genomes]
rs4890631	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4890632	0.95[EUR][1000 genomes]
rs4890633	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4890634	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4890635	0.86[ASN][1000 genomes]
rs55747741	0.88[EUR][1000 genomes]
rs62096523	0.86[EUR][1000 genomes]
rs62096524	0.86[EUR][1000 genomes]
rs62096525	0.88[EUR][1000 genomes]
rs62096526	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62098160	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6507670	0.82[EUR][1000 genomes]
rs6507676	0.85[EUR][1000 genomes]
rs6507677	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6507680	0.94[EUR][1000 genomes]
rs6507681	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6507682	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6507690	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6507691	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6507692	0.95[EUR][1000 genomes]
rs6507693	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs718513	0.92[EUR][1000 genomes]
rs718514	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7227847	0.98[EUR][1000 genomes]
rs7228365	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7230154	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7230995	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7231430	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7231820	0.95[EUR][1000 genomes]
rs7234695	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7236687	0.85[EUR][1000 genomes]
rs7239351	0.93[EUR][1000 genomes]
rs7240354	0.85[EUR][1000 genomes]
rs7241527	0.85[EUR][1000 genomes]
rs7241829	0.85[EUR][1000 genomes]
rs7242375	0.82[EUR][1000 genomes]
rs7245091	0.87[EUR][1000 genomes]
rs73425119	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8084309	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8084827	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8084829	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8085138	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8086610	0.93[EUR][1000 genomes]
rs8086956	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8090542	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8093407	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8094070	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8094706	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8095142	0.92[EUR][1000 genomes]
rs8095729	0.87[EUR][1000 genomes]
rs8098751	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8099202	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9675387	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9807157	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9944715	0.95[EUR][1000 genomes]
rs9944767	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9944836	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9945783	0.98[EUR][1000 genomes]
rs9947206	0.93[EUR][1000 genomes]
rs9948282	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9949494	0.96[EUR][1000 genomes]
rs9951624	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9952469	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9952654	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9956574	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9959813	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9959905	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9960378	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9963153	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8095799	C18orf25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43755200-43780400	Weak transcription	Aorta	Aorta
2	chr18:43755600-43795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:43755800-43779600	Weak transcription	Thymus	Thymus
4	chr18:43756800-43796000	Weak transcription	Esophagus	oesophagus
5	chr18:43758000-43782200	Weak transcription	Right Ventricle	heart
6	chr18:43758800-43785000	Weak transcription	Fetal Thymus	thymus
7	chr18:43761200-43796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr18:43761800-43779800	Weak transcription	Ovary	ovary
9	chr18:43762800-43779600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr18:43763000-43779400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr18:43763000-43785000	Weak transcription	Small Intestine	intestine
12	chr18:43763000-43795800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr18:43763400-43780400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr18:43763400-43784400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr18:43763600-43779600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr18:43763600-43796000	Weak transcription	Fetal Lung	lung
18	chr18:43764600-43795800	Weak transcription	Lung	lung
19	chr18:43765200-43779800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr18:43765600-43779400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr18:43765600-43782000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr18:43765600-43784200	Weak transcription	Primary B cells from cord blood	blood
23	chr18:43766000-43781800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr18:43766000-43783200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr18:43768800-43779600	Weak transcription	Fetal Intestine Large	intestine
26	chr18:43768800-43783000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr18:43769000-43779600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr18:43769200-43802800	Weak transcription	Brain Hippocampus Middle	brain
29	chr18:43769800-43780000	Weak transcription	Stomach Mucosa	stomach
30	chr18:43769800-43784200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr18:43770800-43796000	Weak transcription	Brain Substantia Nigra	brain
32	chr18:43771600-43779800	Weak transcription	Right Atrium	heart
33	chr18:43771800-43795800	Weak transcription	Brain Anterior Caudate	brain
34	chr18:43772000-43795800	Weak transcription	Adipose Nuclei	Adipose
35	chr18:43772000-43795800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr18:43772200-43796000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr18:43772800-43783000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr18:43772800-43795800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr18:43773200-43779600	Weak transcription	Psoas Muscle	Psoas
40	chr18:43773400-43779600	Weak transcription	Liver	Liver
41	chr18:43773800-43779800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr18:43774000-43780000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr18:43774200-43783800	Weak transcription	GM12878-XiMat	blood
44	chr18:43774400-43795800	Weak transcription	Fetal Stomach	stomach
45	chr18:43775200-43783200	Weak transcription	Fetal Brain Female	brain
46	chr18:43776400-43802000	Weak transcription	Brain Germinal Matrix	brain
47	chr18:43776800-43779400	Weak transcription	Osteobl	bone
48	chr18:43776800-43783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr18:43776800-43795800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr18:43777000-43779600	Weak transcription	Placenta	Placenta

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