Variant report

Variant	rs8084309
Chromosome Location	chr18:43751993-43751994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43751426..43753424-chr18:43797848..43800779,3	K562	blood:
2	chr18:43730544..43733450-chr18:43751342..43753487,2	MCF-7	breast:
3	chr18:43751486..43754394-chr18:43913234..43915228,2	MCF-7	breast:
4	chr18:43705752..43708889-chr18:43751231..43755049,3	K562	blood:
5	chr18:43702189..43705091-chr18:43751436..43753812,2	K562	blood:

Variant related genes	Relation type
ENSG00000152240	Chromatin interaction
ENSG00000141622	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs11082512	0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs11082514	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11082518	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12457740	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12604963	0.86[JPT][hapmap]
rs12605945	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12607898	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12608232	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12709736	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12953780	0.85[JPT][hapmap]
rs12962307	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12962951	0.88[EUR][1000 genomes]
rs12963787	0.86[EUR][1000 genomes]
rs12963943	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12967694	0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs12969147	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13381496	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381515	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381523	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381525	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381529	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1791407	0.86[JPT][hapmap]
rs1791413	0.86[JPT][hapmap]
rs1791414	0.86[JPT][hapmap]
rs1808946	0.87[EUR][1000 genomes]
rs36191490	0.87[EUR][1000 genomes]
rs3744858	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4274509	0.86[JPT][hapmap]
rs4335852	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4453594	0.88[EUR][1000 genomes]
rs4453596	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4542747	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4574015	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs4627465	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890317	0.90[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4890319	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs4890320	0.87[EUR][1000 genomes]
rs4890321	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4890626	0.81[CEU][hapmap]
rs4890628	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4890629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4890631	0.87[EUR][1000 genomes]
rs4890632	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4890633	0.90[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs4890634	0.85[EUR][1000 genomes]
rs55747741	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62096523	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62096524	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62096525	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62096526	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62098160	0.82[EUR][1000 genomes]
rs6507670	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6507675	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6507676	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6507677	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6507679	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs6507680	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6507681	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6507682	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6507690	0.88[EUR][1000 genomes]
rs6507691	0.86[EUR][1000 genomes]
rs6507692	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6507693	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs718513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs718514	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7227847	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7228024	0.82[ASN][1000 genomes]
rs7228365	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7230154	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7230995	0.88[EUR][1000 genomes]
rs7231430	0.95[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs7231820	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7234695	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7236687	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7239351	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7240354	0.90[ASN][1000 genomes]
rs7241527	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7241829	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7241983	0.81[ASN][1000 genomes]
rs7242375	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7245091	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73425119	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7506126	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs8084827	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8084829	0.85[EUR][1000 genomes]
rs8085138	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8086610	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8086956	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8090542	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8093407	0.87[EUR][1000 genomes]
rs8094070	0.87[EUR][1000 genomes]
rs8094706	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8095142	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8095729	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8095799	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8098751	0.85[EUR][1000 genomes]
rs8099202	0.90[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs9675387	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs9807157	0.85[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs9944715	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9944767	0.85[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs9944836	0.85[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs9945783	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9947206	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9948282	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9949494	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9951624	0.87[EUR][1000 genomes]
rs9952469	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9952654	0.85[EUR][1000 genomes]
rs9956574	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs9959526	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs9959813	0.85[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs9959905	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs9960378	0.88[EUR][1000 genomes]
rs9963153	0.85[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs9963843	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9967229	0.91[CHD][hapmap];0.86[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8084309	C18orf25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43710600-43752800	Weak transcription	Fetal Brain Female	brain
2	chr18:43733200-43753200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:43737600-43753000	Weak transcription	Fetal Stomach	stomach
4	chr18:43739000-43753200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:43747000-43753000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:43747000-43753000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr18:43748200-43752400	Weak transcription	Dnd41	blood
8	chr18:43748200-43752800	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:43748200-43753000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr18:43748200-43753000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr18:43748200-43753000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr18:43748200-43753000	Weak transcription	Brain Hippocampus Middle	brain
13	chr18:43748200-43753200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr18:43748400-43752600	Weak transcription	Primary B cells from cord blood	blood
15	chr18:43748400-43752600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr18:43748400-43752800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr18:43748400-43752800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr18:43748400-43752800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr18:43748400-43753000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr18:43748400-43753000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr18:43748400-43753000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr18:43748400-43753000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr18:43748400-43753000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr18:43748400-43753000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr18:43748400-43753000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr18:43748400-43753000	Weak transcription	Adipose Nuclei	Adipose
27	chr18:43748400-43753000	Weak transcription	Brain Anterior Caudate	brain
28	chr18:43748400-43753000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr18:43748400-43753000	Weak transcription	Stomach Mucosa	stomach
30	chr18:43748400-43753200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr18:43748400-43753200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr18:43748400-43753200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr18:43748400-43753200	Weak transcription	Colonic Mucosa	Colon
34	chr18:43748400-43753200	Weak transcription	Thymus	Thymus
35	chr18:43748400-43753200	Weak transcription	Spleen	Spleen
36	chr18:43748400-43753400	Weak transcription	Lung	lung
37	chr18:43748600-43753000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr18:43748600-43753000	Weak transcription	Primary T cells from cord blood	blood
39	chr18:43749600-43753000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr18:43749600-43753000	Weak transcription	Fetal Thymus	thymus
41	chr18:43749600-43753200	Weak transcription	Brain Substantia Nigra	brain
42	chr18:43749800-43753000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr18:43749800-43753000	Weak transcription	HSMMtube	muscle
44	chr18:43749800-43753000	Weak transcription	HUVEC	blood vessel
45	chr18:43749800-43753200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr18:43749800-43753200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr18:43749800-43753400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr18:43750000-43752400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr18:43750000-43752400	Weak transcription	GM12878-XiMat	blood
50	chr18:43750000-43752600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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