Variant report

Variant	rs8094706
Chromosome Location	chr18:43770146-43770147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs11082512	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs11082514	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11082518	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12457740	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12604963	0.86[JPT][hapmap]
rs12605945	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12607898	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12608232	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12709736	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12953780	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12954967	0.80[ASN][1000 genomes]
rs12962307	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12962951	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12963787	0.91[EUR][1000 genomes]
rs12963943	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12965578	0.81[ASN][1000 genomes]
rs12967694	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs12969147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13381496	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13381515	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13381523	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13381525	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13381529	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1791407	0.86[JPT][hapmap]
rs1791413	0.86[JPT][hapmap]
rs1791414	0.86[JPT][hapmap]
rs1808946	0.91[EUR][1000 genomes]
rs36191490	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3744858	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4274509	0.86[JPT][hapmap]
rs4335852	0.98[EUR][1000 genomes]
rs4453594	0.93[EUR][1000 genomes]
rs4453596	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4542747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574015	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs4627465	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4890317	0.95[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4890319	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4890320	0.92[EUR][1000 genomes]
rs4890321	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4890626	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4890628	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4890629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4890631	0.91[EUR][1000 genomes]
rs4890632	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4890633	0.94[ASW][hapmap];0.95[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4890634	0.88[EUR][1000 genomes]
rs55747741	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62096523	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62096524	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62096525	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62096526	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62098160	0.86[EUR][1000 genomes]
rs6507670	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6507675	0.86[JPT][hapmap]
rs6507676	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6507677	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6507679	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs6507680	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6507681	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6507682	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6507690	0.92[EUR][1000 genomes]
rs6507691	0.90[EUR][1000 genomes]
rs6507692	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6507693	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs718513	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs718514	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7227847	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7228024	0.84[ASN][1000 genomes]
rs7228365	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs7230154	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs7230905	0.82[ASN][1000 genomes]
rs7230995	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7231430	1.00[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7231820	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7234695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7236687	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7239351	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7240354	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7241527	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7241829	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7242375	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7245091	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73425119	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7506126	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs8084309	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8084827	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8084829	0.90[EUR][1000 genomes]
rs8085138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8086610	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8086956	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8090542	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8093407	0.91[EUR][1000 genomes]
rs8094070	0.91[EUR][1000 genomes]
rs8095142	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8095729	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8095799	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8098751	0.91[EUR][1000 genomes]
rs8099202	0.95[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs9675387	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs9807157	0.90[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs9944715	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9944767	0.90[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs9944836	0.90[CEU][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs9945783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9947206	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9948282	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9949494	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9951624	0.91[EUR][1000 genomes]
rs9952469	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9952654	0.91[EUR][1000 genomes]
rs9956574	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs9959526	0.91[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs9959813	0.90[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs9959905	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs9960378	0.92[EUR][1000 genomes]
rs9963153	0.90[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs9963843	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9967229	0.91[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv978710	chr18:43759964-43770866	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43755200-43780400	Weak transcription	Aorta	Aorta
2	chr18:43755600-43776200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:43755600-43795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:43755800-43776800	Weak transcription	Fetal Muscle Leg	muscle
5	chr18:43755800-43779600	Weak transcription	Thymus	Thymus
6	chr18:43756000-43771000	Weak transcription	NHDF-Ad	bronchial
7	chr18:43756600-43771600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr18:43756800-43796000	Weak transcription	Esophagus	oesophagus
9	chr18:43758000-43782200	Weak transcription	Right Ventricle	heart
10	chr18:43758800-43773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr18:43758800-43775000	Weak transcription	Dnd41	blood
12	chr18:43758800-43785000	Weak transcription	Fetal Thymus	thymus
13	chr18:43761200-43796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr18:43761800-43779800	Weak transcription	Ovary	ovary
15	chr18:43762400-43779000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr18:43762600-43770600	Weak transcription	Right Atrium	heart
17	chr18:43762800-43779600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr18:43763000-43776800	Weak transcription	HSMM	muscle
19	chr18:43763000-43779400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr18:43763000-43785000	Weak transcription	Small Intestine	intestine
21	chr18:43763000-43795800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr18:43763200-43771800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr18:43763200-43776600	Weak transcription	NH-A	brain
24	chr18:43763200-43776800	Weak transcription	Colon Smooth Muscle	Colon
25	chr18:43763400-43770800	Weak transcription	A549	lung
26	chr18:43763400-43780400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr18:43763400-43784400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr18:43763600-43770600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr18:43763600-43770800	Weak transcription	Adipose Nuclei	Adipose
31	chr18:43763600-43776600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr18:43763600-43779600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr18:43763600-43796000	Weak transcription	Fetal Lung	lung
34	chr18:43764600-43795800	Weak transcription	Lung	lung
35	chr18:43764800-43771600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr18:43764800-43773000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr18:43765200-43779800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr18:43765400-43772800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr18:43765400-43779000	Weak transcription	K562	blood
40	chr18:43765600-43770600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr18:43765600-43770600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr18:43765600-43772800	Weak transcription	HMEC	breast
43	chr18:43765600-43776600	Weak transcription	Hela-S3	cervix
44	chr18:43765600-43777000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr18:43765600-43779000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr18:43765600-43779400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr18:43765600-43782000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr18:43765600-43784200	Weak transcription	Primary B cells from cord blood	blood
49	chr18:43765800-43770600	Weak transcription	GM12878-XiMat	blood
50	chr18:43765800-43778600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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