Variant report

Variant	rs4627465
Chromosome Location	chr18:43750205-43750206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43746724..43751707-chr18:43751917..43755971,9	K562	blood:
2	chr18:43746724..43751269-chr18:43752308..43755984,7	K562	blood:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11082512	0.83[EUR][1000 genomes]
rs11082514	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11082518	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12457740	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12605945	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12607898	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12608232	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12709736	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12962307	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12962951	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12963787	0.86[EUR][1000 genomes]
rs12963943	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12967694	0.83[EUR][1000 genomes]
rs12969147	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13381496	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381515	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381523	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381525	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13381529	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1808946	0.86[EUR][1000 genomes]
rs36191490	0.87[EUR][1000 genomes]
rs3744858	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4335852	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4453594	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4453596	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4542747	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4574015	0.87[EUR][1000 genomes]
rs4890317	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4890319	0.88[EUR][1000 genomes]
rs4890320	0.87[EUR][1000 genomes]
rs4890321	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4890628	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4890629	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4890631	0.86[EUR][1000 genomes]
rs4890632	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4890633	0.87[EUR][1000 genomes]
rs4890634	0.83[EUR][1000 genomes]
rs55747741	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62096523	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62096524	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62096525	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62096526	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62098160	0.81[EUR][1000 genomes]
rs6507670	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6507675	0.83[ASN][1000 genomes]
rs6507676	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6507677	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6507680	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6507681	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6507682	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6507690	0.87[EUR][1000 genomes]
rs6507691	0.85[EUR][1000 genomes]
rs6507692	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6507693	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs718513	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs718514	0.83[EUR][1000 genomes]
rs7227847	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7228365	0.87[EUR][1000 genomes]
rs7230154	0.87[EUR][1000 genomes]
rs7230995	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7231430	0.87[EUR][1000 genomes]
rs7231820	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7234695	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7236687	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7239351	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7240354	0.88[ASN][1000 genomes]
rs7241527	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7241829	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7242375	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7245091	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73425119	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8084309	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8084827	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8084829	0.85[EUR][1000 genomes]
rs8085138	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8086610	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8086956	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8090542	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8093407	0.86[EUR][1000 genomes]
rs8094070	0.86[EUR][1000 genomes]
rs8094706	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8095142	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8095729	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8095799	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8098751	0.85[EUR][1000 genomes]
rs8099202	0.87[EUR][1000 genomes]
rs9675387	0.87[EUR][1000 genomes]
rs9807157	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9944715	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9944767	0.83[EUR][1000 genomes]
rs9944836	0.87[EUR][1000 genomes]
rs9945783	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9947206	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9948282	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9949494	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9951624	0.86[EUR][1000 genomes]
rs9952469	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9952654	0.85[EUR][1000 genomes]
rs9956574	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9959813	0.86[EUR][1000 genomes]
rs9959905	0.87[EUR][1000 genomes]
rs9960378	0.87[EUR][1000 genomes]
rs9963153	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2537008	chr18:43749837-43751571	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4627465	C18orf25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43710600-43752800	Weak transcription	Fetal Brain Female	brain
2	chr18:43733200-43753200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:43737600-43753000	Weak transcription	Fetal Stomach	stomach
4	chr18:43739000-43753200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:43747000-43753000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:43747000-43753000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr18:43748200-43751000	Weak transcription	Placenta	Placenta
8	chr18:43748200-43752400	Weak transcription	Dnd41	blood
9	chr18:43748200-43752800	Weak transcription	Fetal Muscle Leg	muscle
10	chr18:43748200-43753000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr18:43748200-43753000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr18:43748200-43753000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr18:43748200-43753000	Weak transcription	Brain Hippocampus Middle	brain
14	chr18:43748200-43753200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr18:43748400-43752600	Weak transcription	Primary B cells from cord blood	blood
16	chr18:43748400-43752600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr18:43748400-43752800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr18:43748400-43752800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr18:43748400-43752800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr18:43748400-43753000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr18:43748400-43753000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr18:43748400-43753000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr18:43748400-43753000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr18:43748400-43753000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr18:43748400-43753000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr18:43748400-43753000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr18:43748400-43753000	Weak transcription	Adipose Nuclei	Adipose
28	chr18:43748400-43753000	Weak transcription	Brain Anterior Caudate	brain
29	chr18:43748400-43753000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr18:43748400-43753000	Weak transcription	Stomach Mucosa	stomach
31	chr18:43748400-43753200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr18:43748400-43753200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr18:43748400-43753200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr18:43748400-43753200	Weak transcription	Colonic Mucosa	Colon
35	chr18:43748400-43753200	Weak transcription	Thymus	Thymus
36	chr18:43748400-43753200	Weak transcription	Spleen	Spleen
37	chr18:43748400-43753400	Weak transcription	Lung	lung
38	chr18:43748600-43753000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr18:43748600-43753000	Weak transcription	Primary T cells from cord blood	blood
40	chr18:43749200-43750400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr18:43749600-43753000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr18:43749600-43753000	Weak transcription	Fetal Thymus	thymus
43	chr18:43749600-43753200	Weak transcription	Brain Substantia Nigra	brain
44	chr18:43749800-43753000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr18:43749800-43753000	Weak transcription	HSMMtube	muscle
46	chr18:43749800-43753000	Weak transcription	HUVEC	blood vessel
47	chr18:43749800-43753200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr18:43749800-43753200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr18:43749800-43753400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr18:43750000-43751400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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