Variant report

Variant	rs6507681
Chromosome Location	chr18:43767066-43767067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43753162..43757343-chr18:43764539..43768120,4	K562	blood:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11082514	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11082518	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12457740	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12605945	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12607898	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12608232	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12709736	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12953780	0.82[ASN][1000 genomes]
rs12962307	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12962951	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12963787	0.84[EUR][1000 genomes]
rs12963943	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12965578	0.80[ASN][1000 genomes]
rs12969147	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13381496	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13381515	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13381523	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13381525	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13381529	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1808946	0.84[EUR][1000 genomes]
rs36191490	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3744858	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4335852	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4453594	0.86[EUR][1000 genomes]
rs4453596	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4542747	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574015	0.86[EUR][1000 genomes]
rs4627465	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4890317	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4890319	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4890320	0.86[EUR][1000 genomes]
rs4890321	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4890628	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4890629	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4890631	0.84[EUR][1000 genomes]
rs4890632	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4890633	0.87[EUR][1000 genomes]
rs4890634	0.82[EUR][1000 genomes]
rs55747741	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62096523	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62096524	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62096525	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62096526	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6507670	0.80[EUR][1000 genomes]
rs6507676	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6507677	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6507680	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6507682	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6507690	0.86[EUR][1000 genomes]
rs6507691	0.86[EUR][1000 genomes]
rs6507692	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6507693	0.86[EUR][1000 genomes]
rs718513	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs718514	0.83[EUR][1000 genomes]
rs7227847	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7228024	0.83[ASN][1000 genomes]
rs7228365	0.86[EUR][1000 genomes]
rs7230154	0.86[EUR][1000 genomes]
rs7230905	0.81[ASN][1000 genomes]
rs7230995	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7231430	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7231820	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7234695	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7236687	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7239351	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7240354	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7241527	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7241829	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7242375	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7245091	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73425119	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8084309	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8084827	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8084829	0.84[EUR][1000 genomes]
rs8085138	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8086610	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8086956	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8090542	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8093407	0.84[EUR][1000 genomes]
rs8094070	0.84[EUR][1000 genomes]
rs8094706	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8095142	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8095729	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8095799	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8098751	0.84[EUR][1000 genomes]
rs8099202	0.87[EUR][1000 genomes]
rs9675387	0.86[EUR][1000 genomes]
rs9807157	0.86[EUR][1000 genomes]
rs9944715	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9944767	0.82[EUR][1000 genomes]
rs9944836	0.86[EUR][1000 genomes]
rs9945783	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9947206	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9948282	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9949494	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9951624	0.84[EUR][1000 genomes]
rs9952469	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9952654	0.86[EUR][1000 genomes]
rs9956574	0.87[EUR][1000 genomes]
rs9959813	0.84[EUR][1000 genomes]
rs9959905	0.86[EUR][1000 genomes]
rs9960378	0.86[EUR][1000 genomes]
rs9963153	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv978710	chr18:43759964-43770866	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6507681	C18orf25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43755000-43769600	Weak transcription	Gastric	stomach
2	chr18:43755200-43780400	Weak transcription	Aorta	Aorta
3	chr18:43755600-43768000	Weak transcription	Fetal Intestine Large	intestine
4	chr18:43755600-43776200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:43755600-43795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:43755800-43776800	Weak transcription	Fetal Muscle Leg	muscle
7	chr18:43755800-43779600	Weak transcription	Thymus	Thymus
8	chr18:43756000-43771000	Weak transcription	NHDF-Ad	bronchial
9	chr18:43756600-43771600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:43756800-43796000	Weak transcription	Esophagus	oesophagus
11	chr18:43758000-43782200	Weak transcription	Right Ventricle	heart
12	chr18:43758800-43773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr18:43758800-43775000	Weak transcription	Dnd41	blood
14	chr18:43758800-43785000	Weak transcription	Fetal Thymus	thymus
15	chr18:43761200-43796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr18:43761800-43779800	Weak transcription	Ovary	ovary
17	chr18:43762400-43779000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr18:43762600-43770600	Weak transcription	Right Atrium	heart
19	chr18:43762800-43779600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr18:43763000-43776800	Weak transcription	HSMM	muscle
21	chr18:43763000-43779400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr18:43763000-43785000	Weak transcription	Small Intestine	intestine
23	chr18:43763000-43795800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr18:43763200-43768400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr18:43763200-43771800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr18:43763200-43776600	Weak transcription	NH-A	brain
27	chr18:43763200-43776800	Weak transcription	Colon Smooth Muscle	Colon
28	chr18:43763400-43770800	Weak transcription	A549	lung
29	chr18:43763400-43780400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr18:43763400-43784400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr18:43763600-43770600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr18:43763600-43770800	Weak transcription	Adipose Nuclei	Adipose
34	chr18:43763600-43776600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr18:43763600-43779600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr18:43763600-43796000	Weak transcription	Fetal Lung	lung
37	chr18:43764600-43768200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr18:43764600-43795800	Weak transcription	Lung	lung
39	chr18:43764800-43769000	Weak transcription	Left Ventricle	heart
40	chr18:43764800-43769400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr18:43764800-43771600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr18:43764800-43773000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr18:43765200-43769400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr18:43765200-43779800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr18:43765400-43767200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr18:43765400-43768600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr18:43765400-43772800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr18:43765400-43779000	Weak transcription	K562	blood
49	chr18:43765600-43767400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr18:43765600-43768400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links