Variant report

Variant	rs9675387
Chromosome Location	chr18:43798023-43798024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43751426..43754548-chr18:43797432..43800779,3	K562	blood:
2	chr18:43751426..43753424-chr18:43797848..43800779,3	K562	blood:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11082514	0.91[EUR][1000 genomes]
rs11082518	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11082519	0.92[ASN][1000 genomes]
rs12457516	0.87[ASN][1000 genomes]
rs12457740	0.85[EUR][1000 genomes]
rs12605945	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12607898	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12608232	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12709736	0.97[EUR][1000 genomes]
rs12962307	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12962951	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12963787	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12963943	0.92[EUR][1000 genomes]
rs12969147	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13381496	0.85[EUR][1000 genomes]
rs13381515	0.87[EUR][1000 genomes]
rs13381523	0.86[EUR][1000 genomes]
rs13381525	0.87[EUR][1000 genomes]
rs13381529	0.87[EUR][1000 genomes]
rs1808946	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36191490	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3744858	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs4335852	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4453594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4453596	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4542747	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4574015	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4627465	0.87[EUR][1000 genomes]
rs4890317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4890319	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890320	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890321	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4890626	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4890628	0.88[CEU][hapmap];0.98[EUR][1000 genomes]
rs4890629	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4890631	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890632	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4890633	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890634	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890635	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs55747741	0.86[EUR][1000 genomes]
rs62096523	0.84[EUR][1000 genomes]
rs62096524	0.84[EUR][1000 genomes]
rs62096525	0.86[EUR][1000 genomes]
rs62096526	0.85[EUR][1000 genomes]
rs62098160	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6507670	0.81[EUR][1000 genomes]
rs6507676	0.84[EUR][1000 genomes]
rs6507677	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6507680	0.92[EUR][1000 genomes]
rs6507681	0.86[EUR][1000 genomes]
rs6507682	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6507690	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6507691	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6507692	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6507693	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs718513	0.94[EUR][1000 genomes]
rs718514	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7227847	0.96[EUR][1000 genomes]
rs7228365	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7230154	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7230995	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7231430	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7231820	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7234695	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs7236687	0.83[EUR][1000 genomes]
rs7239351	0.88[CEU][hapmap];0.95[EUR][1000 genomes]
rs7240354	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7241527	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7241829	0.83[EUR][1000 genomes]
rs7242375	0.80[EUR][1000 genomes]
rs7245091	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs73425119	0.86[EUR][1000 genomes]
rs8084309	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs8084827	0.85[EUR][1000 genomes]
rs8084829	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8085138	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8086610	0.95[EUR][1000 genomes]
rs8086956	0.94[CEU][hapmap];0.95[EUR][1000 genomes]
rs8090542	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8093407	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8094070	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8094706	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs8095142	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8095729	0.85[EUR][1000 genomes]
rs8095799	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8098751	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8099202	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9807157	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9944715	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9944767	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9944836	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9945783	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs9947206	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9948282	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9949494	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9951624	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9952469	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9952654	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9956574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9959813	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9959905	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9960378	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9963153	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9963843	0.88[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9675387	C18orf25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr18:43769200-43802800	Weak transcription	Brain Hippocampus Middle	brain
3	chr18:43776400-43802000	Weak transcription	Brain Germinal Matrix	brain
4	chr18:43777000-43812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:43777800-43805000	Weak transcription	Fetal Intestine Small	intestine
6	chr18:43784600-43802200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr18:43791600-43799600	Weak transcription	Psoas Muscle	Psoas
8	chr18:43791600-43804200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:43791800-43798600	Weak transcription	K562	blood
10	chr18:43791800-43800000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr18:43792200-43814600	Weak transcription	Colon Smooth Muscle	Colon
12	chr18:43792600-43799800	Weak transcription	NHLF	lung
13	chr18:43792800-43799600	Weak transcription	NHDF-Ad	bronchial
14	chr18:43794400-43800200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr18:43794400-43801600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr18:43794600-43801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr18:43794800-43802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr18:43794800-43802600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr18:43794800-43815000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr18:43795000-43799000	Weak transcription	Fetal Kidney	kidney
21	chr18:43795600-43800400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr18:43795600-43800400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr18:43795800-43798600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:43795800-43798800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr18:43795800-43798800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr18:43795800-43799000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr18:43795800-43799000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr18:43795800-43799000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr18:43795800-43799000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr18:43795800-43799200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr18:43795800-43799200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr18:43795800-43799200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr18:43795800-43799200	Strong transcription	Primary hematopoietic stem cells	blood
34	chr18:43795800-43799200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr18:43795800-43799200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr18:43795800-43799200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr18:43795800-43799200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr18:43795800-43799600	Strong transcription	HSMM	muscle
39	chr18:43795800-43800400	Strong transcription	GM12878-XiMat	blood
40	chr18:43795800-43800800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr18:43795800-43801200	Strong transcription	Dnd41	blood
42	chr18:43795800-43802000	Strong transcription	Primary B cells from cord blood	blood
43	chr18:43796000-43798800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr18:43796000-43799000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr18:43796000-43799200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr18:43796000-43799200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr18:43796000-43799600	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr18:43796000-43801000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr18:43796200-43799000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr18:43796400-43799000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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