Variant report

Variant	rs6507679
Chromosome Location	chr18:43764890-43764891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11082514	0.83[ASN][1000 genomes]
rs11082518	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs11663162	0.81[EUR][1000 genomes]
rs11875115	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12604963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12605275	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12605796	0.81[ASN][1000 genomes]
rs12605945	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs12607898	0.86[JPT][hapmap]
rs12953780	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12954967	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12962307	0.86[JPT][hapmap]
rs12965578	0.95[ASN][1000 genomes]
rs12969147	0.86[JPT][hapmap]
rs12970379	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1612622	0.81[ASN][1000 genomes]
rs1626506	0.85[ASN][1000 genomes]
rs1632043	0.85[ASN][1000 genomes]
rs1658904	0.82[ASN][1000 genomes]
rs1658906	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1658907	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1658908	0.82[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs16978526	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16978530	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1791401	0.84[ASN][1000 genomes]
rs1791406	0.81[ASN][1000 genomes]
rs1791407	0.82[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.81[ASN][1000 genomes]
rs1791408	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1791410	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1791411	0.84[ASN][1000 genomes]
rs1791412	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1791413	0.87[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1791414	1.00[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1791421	0.85[ASN][1000 genomes]
rs1866322	0.85[JPT][hapmap]
rs2886001	0.80[ASN][1000 genomes]
rs35029196	0.80[ASN][1000 genomes]
rs35211836	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3744858	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs4274509	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4315430	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4316847	0.81[EUR][1000 genomes]
rs4453596	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs4542747	0.86[JPT][hapmap]
rs4890628	0.81[JPT][hapmap]
rs4890629	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs4890632	0.86[JPT][hapmap]
rs6507667	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6507675	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6507680	0.84[ASN][1000 genomes]
rs6507681	0.82[ASN][1000 genomes]
rs718513	0.86[JPT][hapmap]
rs7227847	0.81[ASN][1000 genomes]
rs7230905	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7231820	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs7234588	0.81[EUR][1000 genomes]
rs7234695	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7239351	0.86[JPT][hapmap]
rs7241527	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs7241983	0.92[ASN][1000 genomes]
rs7242375	0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs7245091	0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs7506126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.92[ASN][1000 genomes]
rs8083916	0.82[CHB][hapmap]
rs8084309	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs8085138	0.83[ASN][1000 genomes]
rs8085233	0.81[JPT][hapmap]
rs8086956	0.91[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs8090542	0.81[ASN][1000 genomes]
rs8094706	0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9944715	0.91[CHD][hapmap];0.86[JPT][hapmap]
rs9945783	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9946831	0.81[JPT][hapmap]
rs9949494	0.86[JPT][hapmap]
rs9952469	0.86[JPT][hapmap]
rs9959526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[ASN][1000 genomes]
rs9963843	0.83[JPT][hapmap]
rs9966603	0.81[JPT][hapmap]
rs9967229	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv978710	chr18:43759964-43770866	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43755000-43766800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:43755000-43769600	Weak transcription	Gastric	stomach
3	chr18:43755200-43780400	Weak transcription	Aorta	Aorta
4	chr18:43755600-43766800	Weak transcription	Fetal Intestine Small	intestine
5	chr18:43755600-43768000	Weak transcription	Fetal Intestine Large	intestine
6	chr18:43755600-43776200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:43755600-43795600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:43755800-43765800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr18:43755800-43766000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr18:43755800-43776800	Weak transcription	Fetal Muscle Leg	muscle
11	chr18:43755800-43779600	Weak transcription	Thymus	Thymus
12	chr18:43756000-43771000	Weak transcription	NHDF-Ad	bronchial
13	chr18:43756200-43765800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr18:43756400-43765600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr18:43756400-43766600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr18:43756600-43765600	Weak transcription	HepG2	liver
17	chr18:43756600-43771600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:43756800-43796000	Weak transcription	Esophagus	oesophagus
19	chr18:43757600-43765600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr18:43758000-43782200	Weak transcription	Right Ventricle	heart
21	chr18:43758400-43767000	Weak transcription	Fetal Stomach	stomach
22	chr18:43758800-43773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr18:43758800-43775000	Weak transcription	Dnd41	blood
24	chr18:43758800-43785000	Weak transcription	Fetal Thymus	thymus
25	chr18:43759200-43766800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr18:43761200-43765600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr18:43761200-43796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr18:43761800-43779800	Weak transcription	Ovary	ovary
29	chr18:43762400-43779000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr18:43762600-43765600	Flanking Active TSS	GM12878-XiMat	blood
31	chr18:43762600-43770600	Weak transcription	Right Atrium	heart
32	chr18:43762800-43779600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr18:43763000-43765400	Weak transcription	Stomach Mucosa	stomach
34	chr18:43763000-43776800	Weak transcription	HSMM	muscle
35	chr18:43763000-43779400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr18:43763000-43785000	Weak transcription	Small Intestine	intestine
37	chr18:43763000-43795800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr18:43763200-43765200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr18:43763200-43765800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr18:43763200-43768400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr18:43763200-43771800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr18:43763200-43776600	Weak transcription	NH-A	brain
43	chr18:43763200-43776800	Weak transcription	Colon Smooth Muscle	Colon
44	chr18:43763400-43765800	Enhancers	Fetal Heart	heart
45	chr18:43763400-43766800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr18:43763400-43770800	Weak transcription	A549	lung
47	chr18:43763400-43780400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr18:43763400-43784400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr18:43763600-43765000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links