Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11662221..11664065-chr18:11667670..11670569,2	K562	blood:
2	chr18:11662625..11665139-chr18:11684651..11687441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260759	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28479287	1.00[EUR][1000 genomes]
rs28485115	1.00[EUR][1000 genomes]
rs3912091	1.00[EUR][1000 genomes]
rs56147380	1.00[EUR][1000 genomes]
rs7243515	1.00[EUR][1000 genomes]
rs7244183	1.00[EUR][1000 genomes]
rs73395663	1.00[EUR][1000 genomes]
rs73408592	1.00[EUR][1000 genomes]
rs73943914	1.00[EUR][1000 genomes]
rs73947316	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73947317	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085362	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8086736	1.00[EUR][1000 genomes]
rs8087388	1.00[EUR][1000 genomes]
rs8093012	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8093696	1.00[EUR][1000 genomes]
rs8094253	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8094352	1.00[EUR][1000 genomes]
rs8094562	1.00[EUR][1000 genomes]
rs9949182	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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