Variant report

Variant	rs9949182
Chromosome Location	chr18:11668062-11668063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28479287	1.00[EUR][1000 genomes]
rs28485115	1.00[EUR][1000 genomes]
rs3912091	1.00[EUR][1000 genomes]
rs56147380	1.00[EUR][1000 genomes]
rs7243515	1.00[EUR][1000 genomes]
rs7244183	1.00[EUR][1000 genomes]
rs73395663	1.00[EUR][1000 genomes]
rs73408592	1.00[EUR][1000 genomes]
rs73943914	1.00[EUR][1000 genomes]
rs73947316	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73947317	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085231	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085362	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8086736	1.00[EUR][1000 genomes]
rs8087388	1.00[EUR][1000 genomes]
rs8089510	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8093012	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8093696	1.00[EUR][1000 genomes]
rs8094253	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8094352	1.00[EUR][1000 genomes]
rs8094562	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11666400-11669400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:11666600-11668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:11666800-11668600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:11667000-11668600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:11667000-11668600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:11667200-11668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr18:11667200-11668400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:11667200-11669200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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