Variant report

Variant	rs8089631
Chromosome Location	chr18:30468395-30468396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13339718	1.00[EUR][1000 genomes]
rs16963740	1.00[EUR][1000 genomes]
rs16963802	1.00[EUR][1000 genomes]
rs16964036	0.85[AFR][1000 genomes]
rs28435690	1.00[EUR][1000 genomes]
rs28448643	1.00[EUR][1000 genomes]
rs28564043	1.00[EUR][1000 genomes]
rs689524	1.00[EUR][1000 genomes]
rs7230398	1.00[EUR][1000 genomes]
rs7231950	1.00[EUR][1000 genomes]
rs7235638	1.00[EUR][1000 genomes]
rs73955268	1.00[EUR][1000 genomes]
rs9950337	1.00[EUR][1000 genomes]
rs9951832	1.00[EUR][1000 genomes]
rs9958052	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30460400-30468800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr18:30460800-30470200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:30466000-30469200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr18:30466000-30469200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr18:30466000-30469600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr18:30466200-30471200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr18:30466400-30468600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr18:30466800-30469200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:30467400-30471400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:30467600-30468800	Weak transcription	Dnd41	blood
11	chr18:30467600-30470600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr18:30467800-30468400	Enhancers	Fetal Intestine Large	intestine
13	chr18:30467800-30468400	Enhancers	Fetal Kidney	kidney
14	chr18:30468000-30469400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:30468200-30468400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr18:30468200-30468600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:30468200-30471200	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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