Variant report

Variant	rs8101132
Chromosome Location	chr19:40122109-40122110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:40121865-40122221	Hela-S3	cervix:	n/a	chr19:40122043-40122054
2	FOS	chr19:40121882-40122115	MCF10A-Er-Src	breast:	n/a	n/a
3	ATF1	chr19:40121907-40122163	K562	blood:	n/a	n/a
4	STAT3	chr19:40121957-40122114	MCF10A-Er-Src	breast:	n/a	n/a
5	CEBPB	chr19:40121831-40122149	MCF-7	breast:	n/a	chr19:40122043-40122054
6	CEBPB	chr19:40121920-40122180	H1-hESC	embryonic stem cell:	n/a	chr19:40122043-40122054
7	EP300	chr19:40121901-40122179	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr19:40121971-40122116	K562	blood:	n/a	chr19:40122043-40122054
9	CEBPB	chr19:40121911-40122159	HepG2	liver:	n/a	chr19:40122043-40122054
10	STAT3	chr19:40121774-40122248	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr19:40121887-40122179	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr19:40121879-40122179	A549	lung:	n/a	chr19:40122043-40122054
13	FOS	chr19:40121869-40122176	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000269519	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10406803	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10418390	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10423087	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10775536	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11083526	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11083527	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1156815	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1156816	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11666212	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11669894	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11673427	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12608711	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12609214	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1985763	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1985764	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2011727	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2079510	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2108390	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2214978	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2354228	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2354229	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2883386	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3842958	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4286215	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4352162	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4361050	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4461191	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4474814	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4577215	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4638715	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4802052	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4803275	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4803279	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4803281	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4803282	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6508880	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6508881	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6508882	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6508893	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6508897	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs717348	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7247678	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7251220	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8104520	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8104655	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8105238	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8109704	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8110098	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs886843	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv34120	chr19:40044635-40131820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv579510	chr19:40121448-40123536	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40121800-40122200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr19:40121800-40122200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr19:40121800-40122200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:40121800-40122400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr19:40121800-40122600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr19:40122000-40122600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr19:40122000-40123000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr19:40122000-40127600	Weak transcription	Placenta	Placenta

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