Variant report

Variant	rs8110098
Chromosome Location	chr19:40118962-40118963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40041791..40042737-chr19:40118062..40118973,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10406803	0.83[ASN][1000 genomes]
rs10418390	0.81[ASN][1000 genomes]
rs10423087	0.82[ASN][1000 genomes]
rs10775536	0.83[ASN][1000 genomes]
rs11083526	0.83[ASN][1000 genomes]
rs11083527	0.83[ASN][1000 genomes]
rs1156815	0.82[ASN][1000 genomes]
rs1156816	0.82[ASN][1000 genomes]
rs11666212	0.81[ASN][1000 genomes]
rs11669894	0.82[ASN][1000 genomes]
rs11673427	0.80[ASN][1000 genomes]
rs12608711	0.82[ASN][1000 genomes]
rs12609214	0.81[ASN][1000 genomes]
rs1985763	0.83[ASN][1000 genomes]
rs1985764	0.83[ASN][1000 genomes]
rs2011727	0.83[ASN][1000 genomes]
rs2079510	0.82[ASN][1000 genomes]
rs2108390	0.82[ASN][1000 genomes]
rs2214978	0.82[ASN][1000 genomes]
rs2354228	0.83[ASN][1000 genomes]
rs2354229	0.83[ASN][1000 genomes]
rs2883386	0.81[ASN][1000 genomes]
rs3842958	0.83[ASN][1000 genomes]
rs4286215	0.83[ASN][1000 genomes]
rs4352162	0.83[ASN][1000 genomes]
rs4474814	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4482407	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4577215	0.85[ASN][1000 genomes]
rs4638715	0.83[ASN][1000 genomes]
rs4802052	0.83[ASN][1000 genomes]
rs4803275	0.83[ASN][1000 genomes]
rs4803279	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4803281	0.82[ASN][1000 genomes]
rs4803282	0.81[ASN][1000 genomes]
rs6508880	0.87[ASN][1000 genomes]
rs6508881	0.87[ASN][1000 genomes]
rs6508882	0.87[ASN][1000 genomes]
rs6508897	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs717348	0.82[ASN][1000 genomes]
rs7247678	0.87[ASN][1000 genomes]
rs7251220	0.87[ASN][1000 genomes]
rs8101132	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8104520	0.83[ASN][1000 genomes]
rs8104655	0.83[ASN][1000 genomes]
rs8105238	0.82[ASN][1000 genomes]
rs8109704	0.82[ASN][1000 genomes]
rs886843	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv34120	chr19:40044635-40131820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40114800-40121800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:40115200-40120400	Weak transcription	Placenta	Placenta

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