Variant report

Variant	rs8107155
Chromosome Location	chr19:35705337-35705338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35705153..35708046-chr19:35947064..35948602,2	MCF-7	breast:
2	chr19:35703283..35706238-chr19:35738621..35741297,3	MCF-7	breast:
3	chr19:35705011..35706655-chr19:35719234..35721990,2	K562	blood:
4	chr19:35699017..35701710-chr19:35704867..35706681,2	K562	blood:
5	chr19:35703379..35705750-chr19:35757891..35759671,2	K562	blood:
6	chr19:35634307..35636181-chr19:35704870..35707266,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105699	Chromatin interaction
ENSG00000177558	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10425008	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11084808	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12463330	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1614559	0.81[CEU][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes]
rs1688010	0.80[AFR][1000 genomes]
rs1688011	0.80[AFR][1000 genomes]
rs1688012	0.80[AFR][1000 genomes]
rs2188328	0.86[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2214021	0.90[EUR][1000 genomes]
rs28579145	0.80[AFR][1000 genomes]
rs487554	0.80[AFR][1000 genomes]
rs495570	0.80[AFR][1000 genomes]
rs498342	0.80[AFR][1000 genomes]
rs521055	0.80[AFR][1000 genomes]
rs538182	0.80[AFR][1000 genomes]
rs540818	0.80[AFR][1000 genomes]
rs565818	0.80[AFR][1000 genomes]
rs6510472	0.86[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs7246127	0.95[EUR][1000 genomes]
rs886107	0.89[TSI][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv1067541	chr19:35698638-35712439	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1066553	chr19:35698638-35749563	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2763203	chr19:35700047-35738400	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs8107155	TEX101	cis	cerebellum	SCAN
rs8107155	GMFG	cis	parietal	SCAN
rs8107155	LRFN1	cis	cerebellum	SCAN
rs8107155	EID2B	cis	parietal	SCAN
rs8107155	ZNF260	cis	cerebellum	SCAN
rs8107155	ZNF566	cis	cerebellum	SCAN

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35693400-35707000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr19:35694200-35708200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr19:35698000-35708200	Enhancers	Primary B cells from peripheral blood	blood
4	chr19:35698000-35708200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr19:35698200-35708000	Enhancers	Primary B cells from cord blood	blood
6	chr19:35699200-35708000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:35700600-35707200	Enhancers	Primary hematopoietic stem cells	blood
8	chr19:35701200-35709400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr19:35701400-35705600	Enhancers	Fetal Thymus	thymus
10	chr19:35702200-35706000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr19:35702800-35705600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr19:35703200-35707000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr19:35703400-35705800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr19:35703600-35706000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr19:35704200-35705600	Enhancers	Placenta	Placenta
16	chr19:35704200-35705600	Enhancers	Stomach Mucosa	stomach
17	chr19:35704200-35705600	Enhancers	HUVEC	blood vessel
18	chr19:35704200-35706200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr19:35704400-35706000	Enhancers	Fetal Heart	heart
20	chr19:35704400-35706200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr19:35704600-35705400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr19:35704600-35705400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr19:35704600-35705400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr19:35704600-35705400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:35704600-35705400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr19:35704600-35705400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr19:35704600-35705400	Enhancers	Brain Hippocampus Middle	brain
28	chr19:35704600-35705400	Enhancers	Colonic Mucosa	Colon
29	chr19:35704600-35705400	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr19:35704600-35705400	Enhancers	Esophagus	oesophagus
31	chr19:35704600-35705400	Enhancers	Fetal Stomach	stomach
32	chr19:35704600-35705400	Enhancers	Lung	lung
33	chr19:35704600-35705400	Enhancers	Ovary	ovary
34	chr19:35704600-35705400	Enhancers	Thymus	Thymus
35	chr19:35704600-35705400	Enhancers	Dnd41	blood
36	chr19:35704600-35705400	Flanking Active TSS	Hela-S3	cervix
37	chr19:35704600-35705600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:35704600-35705600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:35704600-35705600	Enhancers	Fetal Muscle Trunk	muscle
40	chr19:35704600-35705600	Enhancers	Left Ventricle	heart
41	chr19:35704600-35705600	Enhancers	Pancreas	Pancrea
42	chr19:35704600-35705600	Enhancers	Psoas Muscle	Psoas
43	chr19:35704600-35705800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr19:35704600-35705800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr19:35704600-35705800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr19:35704600-35705800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr19:35704600-35705800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr19:35704600-35705800	Enhancers	Fetal Intestine Small	intestine
49	chr19:35704600-35705800	Enhancers	HMEC	breast
50	chr19:35704600-35706000	Enhancers	Fetal Intestine Large	intestine

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