Variant report

Variant	rs8109806
Chromosome Location	chr19:37923959-37923960
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11083424	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2112921	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2305115	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.93[EUR][1000 genomes]
rs2921563	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[EUR][1000 genomes]
rs2972597	0.93[EUR][1000 genomes]
rs2972598	1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs3745763	1.00[JPT][hapmap]
rs45505797	0.86[EUR][1000 genomes]
rs56743641	0.93[EUR][1000 genomes]
rs56917663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59957425	0.93[EUR][1000 genomes]
rs60159855	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61290534	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6508718	0.94[YRI][hapmap];0.87[EUR][1000 genomes]
rs6508720	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7247654	0.93[EUR][1000 genomes]
rs7254780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7255938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7259321	0.97[EUR][1000 genomes]
rs73930999	0.86[EUR][1000 genomes]
rs8100308	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110164	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
3	chr19:37900200-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr19:37903200-37925000	ZNF genes & repeats	Primary T cells from cord blood	blood
5	chr19:37903200-37927200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
8	chr19:37906800-37927000	ZNF genes & repeats	Fetal Brain Female	brain
9	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr19:37907600-37925000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr19:37907600-37926600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr19:37907800-37926000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr19:37910600-37925000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr19:37911000-37926400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr19:37911000-37927000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr19:37911200-37925000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr19:37911200-37926600	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr19:37911200-37927000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr19:37911200-37927000	ZNF genes & repeats	Dnd41	blood
21	chr19:37911200-37936600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
22	chr19:37911200-37936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr19:37911400-37925600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr19:37912000-37925000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
26	chr19:37914600-37925200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr19:37914800-37927000	ZNF genes & repeats	Brain Germinal Matrix	brain
28	chr19:37915000-37926600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
29	chr19:37915200-37924200	ZNF genes & repeats	Left Ventricle	heart
30	chr19:37915200-37925800	ZNF genes & repeats	Ovary	ovary
31	chr19:37915200-37926000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr19:37915400-37926000	ZNF genes & repeats	Fetal Stomach	stomach
33	chr19:37915600-37925000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr19:37915800-37924200	ZNF genes & repeats	Aorta	Aorta
35	chr19:37915800-37926000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
36	chr19:37916400-37925000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
37	chr19:37916400-37926400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
38	chr19:37916400-37926800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
39	chr19:37916600-37924400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
40	chr19:37916600-37924400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
41	chr19:37916600-37925400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr19:37916600-37925600	ZNF genes & repeats	Brain Angular Gyrus	brain
43	chr19:37916600-37927200	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr19:37916800-37925600	ZNF genes & repeats	Brain Anterior Caudate	brain
45	chr19:37917000-37926800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
46	chr19:37918200-37926400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
47	chr19:37918600-37924200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
48	chr19:37919200-37924200	ZNF genes & repeats	Pancreas	Pancrea
49	chr19:37919800-37924800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr19:37919800-37925600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links