Variant report

Variant	rs8100308
Chromosome Location	chr19:37895320-37895321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11083424	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2112921	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2305115	0.90[EUR][1000 genomes]
rs2921563	0.90[EUR][1000 genomes]
rs2972597	0.90[EUR][1000 genomes]
rs2972598	0.90[EUR][1000 genomes]
rs45505797	0.82[EUR][1000 genomes]
rs56743641	0.90[EUR][1000 genomes]
rs56917663	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59957425	0.90[EUR][1000 genomes]
rs60159855	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61290534	0.83[EUR][1000 genomes]
rs6508718	0.83[EUR][1000 genomes]
rs6508720	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7247654	0.90[EUR][1000 genomes]
rs7254780	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7255938	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7259321	0.93[EUR][1000 genomes]
rs73930999	0.82[EUR][1000 genomes]
rs8109806	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110164	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv963044	chr19:37893588-37916743	ZNF genes & repeats Weak transcription Strong transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37884600-37896800	ZNF genes & repeats	Liver	Liver
2	chr19:37887800-37896800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:37892200-37896600	ZNF genes & repeats	Adipose Nuclei	Adipose

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