Variant report

Variant	rs8111055
Chromosome Location	chr19:38077661-38077662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38076622..38080625-chr19:38081977..38086090,6	MCF-7	breast:
2	chr19:38077508..38079095-chr19:38083626..38085233,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF793-1	chr19:38076240-38078249	ENSG00000267470.1
2	lnc-ZNF793-1	chr19:38076240-38078248	NONHSAT066134
3	lnc-ZNF793-1	chr19:38076240-38078248	NONHSAT066138
4	lnc-ZNF793-1	chr19:38076240-38078249	ENSG00000267470.1
5	lnc-ZNF793-1	chr19:38076240-38078248	NR_038247
6	lnc-ZNF793-1	chr19:38076240-38078248	NR_038249
7	lnc-ZNF793-1	chr19:38076240-38078249	ENSG00000267470.1

No data

Variant related genes	Relation type
ENSG00000171817	Chromatin interaction
ENSG00000180479	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1038085	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10417204	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10425671	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11667454	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11667457	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11670655	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11672077	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11883392	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12983298	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1871197	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2045909	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2160640	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2199644	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2291000	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2385116	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2385124	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2385125	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2927741	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972453	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972454	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2972456	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972459	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34351186	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35273320	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4273159	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4802066	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4803228	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62108304	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6508738	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7253174	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7254170	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38032400-38080800	ZNF genes & repeats	Liver	Liver
2	chr19:38038000-38078400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:38038600-38079600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:38041200-38079600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:38045000-38078600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr19:38046600-38079600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr19:38047400-38078600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr19:38049200-38079600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:38051600-38078800	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:38052200-38078600	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr19:38053200-38078200	ZNF genes & repeats	Brain Germinal Matrix	brain
12	chr19:38053200-38078600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr19:38053400-38078400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr19:38059800-38078000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr19:38065200-38078800	ZNF genes & repeats	Colon Smooth Muscle	Colon
16	chr19:38065800-38078400	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr19:38065800-38078600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr19:38068200-38078200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
19	chr19:38068400-38078000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
20	chr19:38068400-38078200	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr19:38068400-38078400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr19:38068400-38078600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:38068400-38078800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr19:38068600-38078200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
25	chr19:38068600-38078400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
26	chr19:38068600-38080000	ZNF genes & repeats	Ovary	ovary
27	chr19:38068600-38080800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr19:38068800-38078200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
29	chr19:38068800-38079800	ZNF genes & repeats	Dnd41	blood
30	chr19:38069200-38079600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr19:38069600-38077800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
32	chr19:38069800-38084600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr19:38070400-38077800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr19:38070400-38079600	ZNF genes & repeats	Fetal Lung	lung
35	chr19:38070600-38079600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
36	chr19:38071000-38078800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr19:38071200-38078800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
38	chr19:38071200-38079600	ZNF genes & repeats	Fetal Kidney	kidney
39	chr19:38071400-38078600	ZNF genes & repeats	Aorta	Aorta
40	chr19:38072400-38077800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr19:38072400-38078800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
42	chr19:38072400-38084600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr19:38072800-38078600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
44	chr19:38073000-38078200	ZNF genes & repeats	Left Ventricle	heart
45	chr19:38073200-38078000	ZNF genes & repeats	Lung	lung
46	chr19:38073200-38079600	ZNF genes & repeats	Brain Substantia Nigra	brain
47	chr19:38073400-38078000	ZNF genes & repeats	Small Intestine	intestine
48	chr19:38073400-38078200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr19:38073800-38078200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:38073800-38078200	ZNF genes & repeats	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links