Variant report

Variant	rs11667454
Chromosome Location	chr19:38170960-38170961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1038085	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10417204	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10425671	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11665877	0.91[EUR][1000 genomes]
rs11667457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668434	0.93[EUR][1000 genomes]
rs11668558	0.91[EUR][1000 genomes]
rs11670655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11672077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11883392	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12972712	0.91[EUR][1000 genomes]
rs12981237	0.91[EUR][1000 genomes]
rs12982288	0.91[EUR][1000 genomes]
rs12983298	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17306508	0.89[EUR][1000 genomes]
rs1871197	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045909	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2160640	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2199644	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2291000	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2385116	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385124	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2385125	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs241947	0.87[EUR][1000 genomes]
rs241953	0.86[EUR][1000 genomes]
rs241959	0.81[EUR][1000 genomes]
rs241960	0.81[EUR][1000 genomes]
rs2909106	0.85[EUR][1000 genomes]
rs2927741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972453	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972454	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2972456	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972459	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3112435	0.91[EUR][1000 genomes]
rs34351186	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34607899	0.93[EUR][1000 genomes]
rs34782935	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34949193	0.86[EUR][1000 genomes]
rs35015599	0.91[EUR][1000 genomes]
rs35214625	0.91[EUR][1000 genomes]
rs35273320	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35415221	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36020184	0.90[EUR][1000 genomes]
rs36092052	0.90[EUR][1000 genomes]
rs3752365	0.91[EUR][1000 genomes]
rs4273159	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4482404	0.91[EUR][1000 genomes]
rs4802066	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4803228	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57308437	0.91[EUR][1000 genomes]
rs62108304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62108339	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62108355	0.90[EUR][1000 genomes]
rs6508738	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7253174	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7254170	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7254828	0.90[EUR][1000 genomes]
rs8111055	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs856302	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38166600-38182600	Weak transcription	Right Ventricle	heart
2	chr19:38166800-38171400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:38166800-38180000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:38167000-38171400	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:38167400-38171600	ZNF genes & repeats	Fetal Brain Female	brain
6	chr19:38168600-38171400	ZNF genes & repeats	Aorta	Aorta
7	chr19:38168600-38171600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr19:38168600-38171600	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr19:38168800-38171400	ZNF genes & repeats	Left Ventricle	heart
10	chr19:38168800-38172200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:38168800-38172600	ZNF genes & repeats	Fetal Stomach	stomach
12	chr19:38169800-38171200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
13	chr19:38169800-38182200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr19:38170400-38171000	Weak transcription	Ovary	ovary
15	chr19:38170400-38173600	Weak transcription	Fetal Lung	lung
16	chr19:38170400-38176600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr19:38170400-38177000	Weak transcription	Brain Anterior Caudate	brain
18	chr19:38170400-38177200	Weak transcription	Psoas Muscle	Psoas
19	chr19:38170400-38182200	Weak transcription	Brain Substantia Nigra	brain
20	chr19:38170600-38182200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:38170800-38182200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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