Variant report

Variant	rs3752365
Chromosome Location	chr19:38230720-38230721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1038085	0.80[EUR][1000 genomes]
rs10407657	0.85[CEU][hapmap]
rs10417204	0.81[EUR][1000 genomes]
rs10422056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs10424612	0.89[CEU][hapmap]
rs10425671	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11083438	0.88[AMR][1000 genomes]
rs11083439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs11665877	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11667454	0.91[EUR][1000 genomes]
rs11667457	0.91[EUR][1000 genomes]
rs11668384	0.84[AMR][1000 genomes]
rs11668434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11670655	0.91[EUR][1000 genomes]
rs11672077	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs11883392	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12462485	0.88[AMR][1000 genomes]
rs12610891	0.84[AMR][1000 genomes]
rs12972712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12981237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12982288	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12983298	0.91[EUR][1000 genomes]
rs17306508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17306795	0.91[CHB][hapmap]
rs1871197	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2045909	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2126978	0.84[CEU][hapmap]
rs2160640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2199644	0.80[EUR][1000 genomes]
rs2291000	0.84[EUR][1000 genomes]
rs2385116	0.91[EUR][1000 genomes]
rs2385124	0.81[EUR][1000 genomes]
rs2385125	0.80[EUR][1000 genomes]
rs241937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs241940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs241941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs241942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs241943	0.92[AMR][1000 genomes]
rs241944	0.92[AMR][1000 genomes]
rs241946	0.92[AMR][1000 genomes]
rs241947	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs241948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs241951	0.90[CHB][hapmap]
rs241953	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs241957	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs241959	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs241960	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2909106	0.94[EUR][1000 genomes]
rs2927741	0.91[EUR][1000 genomes]
rs2927744	0.85[CEU][hapmap]
rs2972453	0.91[EUR][1000 genomes]
rs2972454	0.89[EUR][1000 genomes]
rs2972456	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2972459	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs3112435	1.00[EUR][1000 genomes]
rs34351186	0.89[EUR][1000 genomes]
rs34607899	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34782935	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34949193	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35015599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35214625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273320	0.91[EUR][1000 genomes]
rs353406	0.81[AMR][1000 genomes]
rs35415221	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36020184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36092052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3894129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs4273159	0.85[EUR][1000 genomes]
rs4482404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802066	0.85[EUR][1000 genomes]
rs4802069	0.85[CEU][hapmap]
rs4802134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4803216	0.89[CEU][hapmap]
rs4803228	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs4803536	0.84[AMR][1000 genomes]
rs4803566	0.84[AMR][1000 genomes]
rs57308437	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62108304	0.91[EUR][1000 genomes]
rs62108339	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62108355	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6508738	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6508748	0.84[AMR][1000 genomes]
rs697433	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs7250668	0.84[AMR][1000 genomes]
rs7253174	0.88[EUR][1000 genomes]
rs7254170	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7254828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7255283	0.85[CEU][hapmap]
rs8102871	0.84[AMR][1000 genomes]
rs8103882	0.84[AMR][1000 genomes]
rs8105694	0.84[AMR][1000 genomes]
rs8110417	0.84[AMR][1000 genomes]
rs8111400	1.00[CHB][hapmap]
rs8113076	0.85[CEU][hapmap]
rs856302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs856309	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38221200-38241800	ZNF genes & repeats	Liver	Liver
2	chr19:38224600-38241600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:38225200-38232400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr19:38225200-38232400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:38225200-38232400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
6	chr19:38225200-38232400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr19:38225200-38232400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr19:38225200-38237200	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:38225400-38231600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr19:38225400-38232400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:38225400-38232400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr19:38226000-38232200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr19:38226200-38232200	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr19:38226200-38232400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:38227200-38231600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
16	chr19:38227400-38231000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr19:38227400-38232400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:38227400-38233600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
19	chr19:38227600-38230800	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr19:38227600-38231600	ZNF genes & repeats	Ovary	ovary
21	chr19:38228200-38231400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr19:38228200-38231800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:38228200-38232000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
24	chr19:38228400-38232200	ZNF genes & repeats	Colon Smooth Muscle	Colon
25	chr19:38228400-38232400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr19:38228400-38232400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
27	chr19:38228400-38232400	ZNF genes & repeats	Fetal Muscle Leg	muscle
28	chr19:38228600-38231000	ZNF genes & repeats	Brain Substantia Nigra	brain
29	chr19:38228600-38231400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
30	chr19:38229000-38231200	ZNF genes & repeats	Psoas Muscle	Psoas
31	chr19:38229000-38231600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr19:38229000-38238000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
33	chr19:38229200-38230800	ZNF genes & repeats	Aorta	Aorta
34	chr19:38229200-38230800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
35	chr19:38229200-38231000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr19:38229200-38231000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr19:38229200-38231000	ZNF genes & repeats	Fetal Intestine Large	intestine
38	chr19:38229200-38231000	ZNF genes & repeats	Fetal Kidney	kidney
39	chr19:38229200-38231000	ZNF genes & repeats	Left Ventricle	heart
40	chr19:38229200-38231400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:38229200-38231400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr19:38229200-38231600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
43	chr19:38229200-38231600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr19:38229200-38231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr19:38229200-38231600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
46	chr19:38229200-38231800	ZNF genes & repeats	HSMMtube	muscle
47	chr19:38229200-38232000	Strong transcription	Fetal Brain Female	brain
48	chr19:38229200-38232200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr19:38229200-38232400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr19:38229200-38232400	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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