Variant report

Variant	rs4802069
Chromosome Location	chr19:38122094-38122095
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10153500	1.00[YRI][hapmap]
rs1038084	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1038085	0.85[CEU][hapmap]
rs10407657	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10424612	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10425671	0.84[CEU][hapmap]
rs11083424	0.84[YRI][hapmap]
rs1116234	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11668434	0.89[CEU][hapmap]
rs11668558	0.89[CEU][hapmap]
rs11672077	0.89[CEU][hapmap]
rs11880056	0.95[YRI][hapmap]
rs11883255	0.95[YRI][hapmap]
rs11883392	0.85[CEU][hapmap]
rs12981750	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17306508	0.89[CEU][hapmap]
rs1871197	0.84[CEU][hapmap]
rs2045909	0.89[CEU][hapmap]
rs2061778	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2126978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2160640	0.89[CEU][hapmap]
rs2199644	0.89[CEU][hapmap]
rs241948	0.89[CEU][hapmap]
rs2891683	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2927743	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs2927744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2972456	0.85[CEU][hapmap]
rs2972459	0.85[CEU][hapmap]
rs3752365	0.85[CEU][hapmap]
rs4482404	0.89[CEU][hapmap]
rs4803216	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4803228	0.89[CEU][hapmap]
rs56281742	0.80[AFR][1000 genomes]
rs62108289	0.81[AFR][1000 genomes]
rs62108297	0.80[AFR][1000 genomes]
rs62108344	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6508738	0.84[CEU][hapmap]
rs7245981	1.00[YRI][hapmap]
rs7254170	0.84[CEU][hapmap]
rs7254828	0.89[CEU][hapmap]
rs7255283	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7256747	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7259566	0.97[EUR][1000 genomes]
rs73932929	0.81[AFR][1000 genomes]
rs8101991	0.88[YRI][hapmap]
rs8102189	0.80[AFR][1000 genomes]
rs8102916	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8108261	0.80[AFR][1000 genomes]
rs8113076	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs856302	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38121800-38122600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:38121800-38122800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:38121800-38139200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:38121800-38140600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:38122000-38122200	ZNF genes & repeats	HSMM	muscle

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