Variant report

Variant	rs12981750
Chromosome Location	chr19:38080945-38080946
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1038084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10407657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10424612	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1116234	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2061778	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2126978	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2891683	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2927744	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4802069	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4803216	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62108344	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7255283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7256747	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7259566	0.94[EUR][1000 genomes]
rs8102916	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8113076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38069800-38084600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:38072400-38084600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr19:38075200-38084600	Weak transcription	Fetal Heart	heart
4	chr19:38077200-38084600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr19:38078200-38081000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr19:38078200-38084400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr19:38078200-38084600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:38078200-38084600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr19:38078600-38084600	Weak transcription	Thymus	Thymus
10	chr19:38078800-38084600	Weak transcription	Colonic Mucosa	Colon
11	chr19:38079600-38081800	Weak transcription	Brain Substantia Nigra	brain
12	chr19:38079600-38082000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr19:38079600-38083200	Weak transcription	Psoas Muscle	Psoas
14	chr19:38079600-38083600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:38079600-38084600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr19:38079600-38084600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr19:38080000-38084400	Weak transcription	Left Ventricle	heart
18	chr19:38080200-38084600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr19:38080400-38084600	Weak transcription	Small Intestine	intestine
20	chr19:38080600-38083000	Weak transcription	Fetal Kidney	kidney
21	chr19:38080600-38084400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr19:38080800-38082000	Weak transcription	Liver	Liver
23	chr19:38080800-38082800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links