Variant report

Variant	rs7259566
Chromosome Location	chr19:38095503-38095504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38094621..38097474-chr19:38099198..38101401,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1038084	0.90[EUR][1000 genomes]
rs10407657	0.94[EUR][1000 genomes]
rs10424612	0.94[EUR][1000 genomes]
rs1116234	1.00[EUR][1000 genomes]
rs12981750	0.94[EUR][1000 genomes]
rs2061778	0.93[EUR][1000 genomes]
rs2126978	1.00[EUR][1000 genomes]
rs2891683	1.00[EUR][1000 genomes]
rs2927744	0.97[EUR][1000 genomes]
rs4802069	0.97[EUR][1000 genomes]
rs4803216	0.91[EUR][1000 genomes]
rs62108344	0.86[EUR][1000 genomes]
rs7255283	0.94[EUR][1000 genomes]
rs7256747	0.88[EUR][1000 genomes]
rs8102916	0.96[EUR][1000 genomes]
rs8113076	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38086400-38095600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr19:38086400-38095600	Weak transcription	Stomach Mucosa	stomach
3	chr19:38086600-38098200	Weak transcription	Colonic Mucosa	Colon
4	chr19:38086600-38098800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr19:38086600-38099400	Weak transcription	Fetal Stomach	stomach
6	chr19:38086600-38103200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr19:38086800-38095600	Weak transcription	Fetal Kidney	kidney
8	chr19:38087200-38099400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr19:38087200-38100200	Weak transcription	Right Ventricle	heart
10	chr19:38087200-38103000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr19:38087800-38107400	ZNF genes & repeats	Liver	Liver
12	chr19:38089200-38107200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr19:38090400-38097600	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:38090400-38105200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr19:38090600-38105400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr19:38091200-38096200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:38091200-38101000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr19:38092200-38103400	Weak transcription	Thymus	Thymus
19	chr19:38092400-38102400	Weak transcription	Dnd41	blood
20	chr19:38092600-38095800	Weak transcription	Fetal Lung	lung
21	chr19:38092600-38097200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr19:38093200-38095600	Weak transcription	Colon Smooth Muscle	Colon
23	chr19:38093400-38100200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr19:38093600-38102800	Weak transcription	Fetal Brain Female	brain
25	chr19:38093600-38105000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
26	chr19:38093800-38095600	Weak transcription	Primary B cells from cord blood	blood
27	chr19:38093800-38095600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr19:38093800-38095600	Weak transcription	Ovary	ovary
29	chr19:38093800-38095600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr19:38093800-38095800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr19:38093800-38097000	Weak transcription	Brain Angular Gyrus	brain
32	chr19:38093800-38097000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr19:38093800-38099600	Weak transcription	Pancreas	Pancrea
34	chr19:38093800-38101000	Weak transcription	Psoas Muscle	Psoas
35	chr19:38094000-38095600	Weak transcription	Primary T cells from cord blood	blood
36	chr19:38094000-38095600	Weak transcription	Brain Substantia Nigra	brain
37	chr19:38094000-38095600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr19:38094200-38096400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr19:38094200-38097400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr19:38094200-38098400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr19:38094200-38098800	Weak transcription	Aorta	Aorta
42	chr19:38094200-38098800	Weak transcription	Lung	lung
43	chr19:38094400-38095600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr19:38094400-38095600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr19:38094400-38095600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr19:38094400-38096600	Weak transcription	Brain Hippocampus Middle	brain
47	chr19:38094600-38095600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr19:38094600-38095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr19:38094600-38097200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr19:38094600-38102600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links